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MG-RAST, an open-source web application server, facilitates automatic phylogenetic and functional analysis of metagenomes.It stands as one of the largest repositories for metagenomic data, employing the acronym for Metagenomic Rapid Annotations using Subsystems Technology (MG-RAST).
Faster and efficient tools are needed to keep pace with the high-throughput sequencing, because the BLAST-based approaches such as MG-RAST or MEGAN run slowly to annotate large samples (e.g., several hours to process a small/medium size dataset/sample [56]). Thus, ultra-fast classifiers have recently emerged, thanks to more affordable powerful ...
MG-RAST Metagenomics Rapid Annotation using Subsystem Technology server; The New Science of Metagenomics: Revealing the Secrets of Our Microbial Planet A report released by the National Research Council in March 2007. Also, see the Report In Brief. Archived 2010-04-15 at the Wayback Machine
PDFtk (short for PDF Toolkit) is a toolkit for manipulating Portable Document Format (PDF) documents. [ 3 ] [ 4 ] It runs on Linux , Windows and macOS . [ 5 ] It comes in three versions: PDFtk Server ( open-source command-line tool ), PDFtk Free ( freeware ) and PDFtk Pro ( proprietary paid ). [ 2 ]
The fourth is a great example of how interactive graphical tools enable a worker involved in sequence analysis to conveniently execute a variety if different computational tools to explore an alignment's phylogenetic implications; or, to predict the structure and functional properties of a specific sequence, e.g., comparative modelling.
The annotation should be expressed as a Uniform Resource Identifier (URI). The collection-specific identifier should be analysed within the framework of the data collection. Qualifiers (optional) should be used to refine the link between the model components and the referenced information, for example "has_a", "is_version_of" and "is_homolog_to".
This strain displays a GC-content of 46.1% in a circular chromosome of 3.68 Mbp. 3,928 protein-coding sequences were identified, and 1,822 protein-coding sequences were appointed to one of the 457 RAST subsystems. [3] RAST, Rapid Annotation using Subsystem Technology, is a server that generates bacterial and archaeal genome annotations. [11]
Several projects to improve RefSeq services are currently in development by the NCBI, often in collaboration with research centers such as EMBL-EBI: . Consensus CDS (CCDS): This project aims to identify a core set of human and mouse protein-coding regions and standardize sets of genes with high and consistent levels of genomic annotation quality.