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Character state identity is the hypothesis that the particular condition in two or more taxa is "the same" as far as our character coding scheme is concerned. Thus, two Adenines at the same aligned nucleotide site are hypothesized to be homologous unless that hypothesis is subsequently contradicted by other evidence.
Homoplasy, in biology and phylogenetics, is the term used to describe a feature that has been gained or lost independently in separate lineages over the course of evolution. This is different from homology , which is the term used to characterize the similarity of features that can be parsimoniously explained by common ancestry . [ 1 ]
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Eye color is an example of a (physical) phenotypic trait. A phenotypic trait, [1] [2] simply trait, or character state [3] [4] is a distinct variant of a phenotypic characteristic of an organism; it may be either inherited or determined environmentally, but typically occurs as a combination of the two. [5]
Character evolution and the character state changes that drive this type of evolution are what help researchers construct these trees in a fashion referred to as maximum parsimony. When talking about phylogenetics, maximum parsimony refers to a method of inferring a phylogenetic tree in a way that minimizes the number of implied character state ...
In doing so, a derived character is depicted as a character procured through evolution from the previous ancestral state, and persisting due to fixation of derived alleles. Whereas, a primitive character is one that is originally present in the ancestral population. [5] Primitive characters are avoided as they depict the ancestral character state.
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Willi Hennig 1972 Peter Chalmers Mitchell in 1920 Robert John Tillyard. The original methods used in cladistic analysis and the school of taxonomy derived from the work of the German entomologist Willi Hennig, who referred to it as phylogenetic systematics (also the title of his 1966 book); but the terms "cladistics" and "clade" were popularized by other researchers.