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The size of assembly B is 305 kbp, the N50 contig length drops to 50 kbp because 80 + 70 + 50 is greater than 50% of 305, and the L50 contig count is 3 contigs. This example illustrates that one can sometimes increase the N50 length simply by removing some of the shortest contigs or scaffolds from an assembly.
In the simplest case of observations at two time points, RGR is calculated using the following equation: [1] = - - , where: = natural logarithm = time one (e.g. in days)
Programming with Big Data in R (pbdR) [1] is a series of R packages and an environment for statistical computing with big data by using high-performance statistical computation. [ 2 ] [ 3 ] The pbdR uses the same programming language as R with S3/S4 classes and methods which is used among statisticians and data miners for developing statistical ...
R is a programming language for statistical computing and data visualization. It has been adopted in the fields of data mining, bioinformatics and data analysis. [9] The core R language is augmented by a large number of extension packages, containing reusable code, documentation, and sample data. R software is open-source and free software.
Log-linear analysis starts with the saturated model and the highest order interactions are removed until the model no longer accurately fits the data. Specifically, at each stage, after the removal of the highest ordered interaction, the likelihood ratio chi-square statistic is computed to measure how well the model is fitting the data.
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The different units of information (bits for the binary logarithm log 2, nats for the natural logarithm ln, bans for the decimal logarithm log 10 and so on) are constant multiples of each other. For instance, in case of a fair coin toss, heads provides log 2 (2) = 1 bit of information, which is approximately 0.693 nats or 0.301 decimal digits.
R 2 L is given by Cohen: [1] =. This is the most analogous index to the squared multiple correlations in linear regression. [3] It represents the proportional reduction in the deviance wherein the deviance is treated as a measure of variation analogous but not identical to the variance in linear regression analysis. [3]