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In computer science, the longest repeated substring problem is the problem of finding the longest substring of a string that occurs at least twice. This problem can be solved in linear time and space Θ ( n ) {\displaystyle \Theta (n)} by building a suffix tree for the string (with a special end-of-string symbol like '$' appended), and finding ...
The variable z is used to hold the length of the longest common substring found so far. The set ret is used to hold the set of strings which are of length z. The set ret can be saved efficiently by just storing the index i, which is the last character of the longest common substring (of size z) instead of S[(i-z+1)..i].
The longest repeated substring problem for a string of length can be solved in () time using both the suffix array and the LCP array. It is sufficient to perform a linear scan through the LCP array in order to find its maximum value v m a x {\displaystyle v_{max}} and the corresponding index i {\displaystyle i} where v m a x {\displaystyle v ...
Finding the longest repeated substring; Finding the longest common substring; Finding the longest palindrome in a string; Suffix trees are often used in bioinformatics applications, searching for patterns in DNA or protein sequences (which can be viewed as long strings of characters). The ability to search efficiently with mismatches might be ...
If is a substring of , it is also a subsequence, which is a more general concept. The occurrences of a given pattern in a given string can be found with a string searching algorithm. Finding the longest string which is equal to a substring of two or more strings is known as the longest common substring problem.
A longest common subsequence (LCS) is the longest subsequence common to all sequences in a set of sequences (often just two sequences). It differs from the longest common substring : unlike substrings, subsequences are not required to occupy consecutive positions within the original sequences.
Longest common substring problem: find the longest string (or strings) that is a substring (or are substrings) of two or more strings; Substring search. Aho–Corasick string matching algorithm: trie based algorithm for finding all substring matches to any of a finite set of strings
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