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A chordate (/ ˈ k ɔːr d eɪ t / KOR-dayt) is a deuterostomal bilaterian animal belonging to the phylum Chordata (/ k ɔːr ˈ d eɪ t ə / kor-DAY-tə).All chordates possess, at some point during their larval or adult stages, five distinctive physical characteristics (synapomorphies) that distinguish them from other taxa.
The characteristics used to create a cladogram can be roughly categorized as either morphological (synapsid skull, warm blooded, notochord, unicellular, etc.) or molecular (DNA, RNA, or other genetic information). [7] Prior to the advent of DNA sequencing, cladistic analysis primarily used morphological data.
The field depends on whole genome data (the entire DNA sequence) of organisms. It uses comparisons of synteny blocks, chromosome translocation , and other genomic rearrangements to determine the evolutionary history of the clade, and to reconstruct the genome of the founding species.
The idea of a tree of life arose from ancient notions of a ladder-like progression from lower into higher forms of life (such as in the Great Chain of Being).Early representations of "branching" phylogenetic trees include a "paleontological chart" showing the geological relationships among plants and animals in the book Elementary Geology, by Edward Hitchcock (first edition: 1840).
For example, in a full tree of life, the entire clade of animals can be collapsed to a single branch of the tree. However, this is merely a limitation of rendering space. In theory, a true and complete tree for all living organisms or for any DNA sequence could be generated. [4] Nevertheless, phylogenies can sometimes appear in a non-treelike form.
Molecular phylogenetics (/ m ə ˈ l ɛ k j ʊ l ər ˌ f aɪ l oʊ dʒ ə ˈ n ɛ t ɪ k s, m ɒ-, m oʊ-/ [1] [2]) is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to determine ...
Cladogram (a branching tree diagram) illustrating the relationships of organisms within groups of taxa known as clades. The vertical line stem at the base represents the last common ancestor . The blue and orange subgroups are clades, each defined by a common ancestor stem at the base of its respective subgroup branch .
A sequence alignment is a way of arranging the sequences of protein, RNA or DNA, to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. The concept initially compares only two such sequences in the so called pairwise alignment.