Search results
Results from the WOW.Com Content Network
Relational database concepts of computer science and Information retrieval concepts of digital libraries are important for understanding biological databases. Biological database design, development, and long-term management is a core area of the discipline of bioinformatics. [3]
The MDB tools project is an open source effort to create a set of software libraries and utilities to manipulate files in the proprietary JET 3, 4 and 5 database formats (used by Microsoft Access.). Version 0.7 was released in June 2012. Jet 5 is only available on the GitHub master branch.
Tools for querying and downloading gene expression profiles are provided. Human Protein Atlas (HPA [10]): a public database with expression profiles of human protein coding genes both on mRNA and protein level in tissues, cells, subcellular compartments, and cancer tumors. Legume Information System (LIS): genomic database for the legume family [11]
Bioinformatics tools aid in comparing, analyzing and interpreting genetic and genomic data and more generally in the understanding of evolutionary aspects of molecular biology. At a more integrative level, it helps analyze and catalogue the biological pathways and networks that are an important part of systems biology .
Database querying tools BioMart: a query-oriented data management system; InterMine: open source data warehouse system; Biological Pathways Pathway Tools: tools for metabolic pathway information, and analysis of high-throughput functional genomics data; Regulatory Networks
The PDB is a key in areas of structural biology, such as structural genomics. Most major scientific journals and some funding agencies now require scientists to submit their structure data to the PDB. Many other databases use protein structures deposited in the PDB.
In the field of database design, a multi-model database is a database management system designed to support multiple data models against a single, integrated backend. In contrast, most database management systems are organized around a single data model that determines how data can be organized, stored, and manipulated. [1]
BioNumbers is a free-access database of quantitative data in biology designed to provide the scientific community with access to the large amount of data now generated in the biological literature. The database aims to make quantitative values more easily available, to aid fields such as systems biology.