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  2. List of neuroimaging software - Wikipedia

    en.wikipedia.org/wiki/List_of_neuroimaging_software

    Neuroimaging software is used to study the structure and function of the brain. To see an NIH Blueprint for Neuroscience Research funded clearinghouse of many of these software applications, as well as hardware, etc. go to the NITRC web site. 3D Slicer Extensible, free open source multi-purpose software for visualization and analysis.

  3. FreeSurfer - Wikipedia

    en.wikipedia.org/wiki/FreeSurfer

    57,541 copies of the FreeSurfer software package have been registered for use as of April 2022 [5] and it is a core tool in the processing pipelines of the Human Connectome Project, [6] the UK Biobank, [7] the Adolescent Brain Cognitive Development Study, [8] and the Alzheimer's Disease Neuroimaging Initiative. [9]

  4. Statistical parametric mapping - Wikipedia

    en.wikipedia.org/wiki/Statistical_parametric_mapping

    Statistical parametric mapping (SPM) is a statistical technique for examining differences in brain activity recorded during functional neuroimaging experiments. It was created by Karl Friston. It may alternatively refer to software created by the Wellcome Department of Imaging Neuroscience at University College London to carry out such analyses.

  5. FMRIB Software Library - Wikipedia

    en.wikipedia.org/wiki/FMRIB_Software_Library

    Example FSL GUIs. The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC computers. It is freely available for non-commercial use.

  6. Vaa3D - Wikipedia

    en.wikipedia.org/wiki/Vaa3D

    Vaa3D was created in 2007 to tackle the large-scale brain mapping project at Janelia Farm of the Howard Hughes Medical Institute.The initial goal was to quickly visualize any of the tens of thousands of large 3D laser scanning microscopy image stacks of fruit fly brains, each with a few gigabytes in volume.

  7. ITK-SNAP - Wikipedia

    en.wikipedia.org/wiki/ITK-SNAP

    The software was designed with the audience of clinical and basic science researchers in mind, and emphasis has been placed on having a user-friendly interface and maintaining a limited feature set to prevent feature creep. ITK-SNAP is most frequently used to work with magnetic resonance imaging (MRI), cone-beam computed tomography (CBCT) and ...

  8. Medical image computing - Wikipedia

    en.wikipedia.org/wiki/Medical_image_computing

    The simplest approach is to model medical images as deformed versions of a single template image. For example, anatomical MRI brain scans are often mapped to the MNI template [35] as to represent all the brain scans in common coordinates. The main drawback of a single-template approach is that if there are significant differences between the ...

  9. Brain simulation - Wikipedia

    en.wikipedia.org/wiki/Brain_simulation

    In the field of computational neuroscience, brain simulation is the concept of creating a functioning computer model of a brain or part of a brain. [1] Brain simulation projects intend to contribute to a complete understanding of the brain, and eventually also assist the process of treating and diagnosing brain diseases .