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  2. Protein–protein interaction prediction - Wikipedia

    en.wikipedia.org/wiki/Proteinprotein...

    Proteinprotein interaction prediction is a field combining bioinformatics and structural biology in an attempt to identify and catalog physical interactions between pairs or groups of proteins. Understanding proteinprotein interactions is important for the investigation of intracellular signaling pathways, modelling of protein complex ...

  3. List of protein subcellular localization prediction tools

    en.wikipedia.org/wiki/List_of_protein_sub...

    This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...

  4. Protein–protein interaction - Wikipedia

    en.wikipedia.org/wiki/Proteinprotein_interaction

    For example, the primary database IntAct has 572,063 interactions, [64] the meta-database APID has 678,000 interactions, [65] and the predictive database STRING has 25,914,693 interactions. [66] However, it is important to note that some of the interactions in the STRING database are only predicted by computational methods such as Genomic ...

  5. STRING - Wikipedia

    en.wikipedia.org/wiki/STRING

    Proteinprotein interaction networks are an important ingredient for the system-level understanding of cellular processes. Such networks can be used for filtering and assessing functional genomics data and for providing an intuitive platform for annotating structural, functional and evolutionary properties of proteins.

  6. BioGRID - Wikipedia

    en.wikipedia.org/wiki/BioGRID

    The Biological General Repository for Interaction Datasets (BioGRID) is a curated biological database of protein-protein interactions, genetic interactions, chemical interactions, and post-translational modifications created in 2003 (originally referred to as simply the General Repository for Interaction Datasets (GRID) [2] by Mike Tyers, Bobby-Joe Breitkreutz, and Chris Stark at the Lunenfeld ...

  7. Database of Interacting Proteins - Wikipedia

    en.wikipedia.org/wiki/Database_of_Interacting...

    The data stored within DIP have been curated, both manually, by expert curators, and automatically, using computational approaches that utilize the knowledge about the proteinprotein interaction networks extracted from the most reliable, core subset of the DIP data. The database was initially released in 2002.

  8. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    Protein-protein and other molecular interactions Database of Interacting Proteins: Univ. of California: Protein-protein and other molecular interactions IntAct [21] EMBL-EBI: open-source database for molecular interactions Protein-protein and other molecular interactions String: an open source molecular interaction database to study ...

  9. Cytoscape - Wikipedia

    en.wikipedia.org/wiki/Cytoscape

    Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating with gene expression profiles and other state data. Additional features are available as plugins. Plugins are available for network and molecular profiling analyses, new layouts, additional file format support and ...