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BIRCH (balanced iterative reducing and clustering using hierarchies) is an algorithm used to perform connectivity-based clustering for large data-sets. [7] It is regarded as one of the fastest clustering algorithms, but it is limited because it requires the number of clusters as an input.
A major step in the module centric analysis is to cluster genes into network modules using a network proximity measure. Roughly speaking, a pair of genes has a high proximity if it is closely interconnected. By convention, the maximal proximity between two genes is 1 and the minimum proximity is 0.
Cluster analysis or clustering is the task of grouping a set of objects in such a way that objects in the same group (called a cluster) are more similar (in some specific sense defined by the analyst) to each other than to those in other groups (clusters).
In single-linkage clustering, the distance between two clusters is determined by a single pair of elements: those two elements (one in each cluster) that are closest to each other. The shortest of these pairwise distances that remain at any step causes the two clusters whose elements are involved to be merged.
The standard algorithm for hierarchical agglomerative clustering (HAC) has a time complexity of () and requires () memory, which makes it too slow for even medium data sets. . However, for some special cases, optimal efficient agglomerative methods (of complexity ()) are known: SLINK [2] for single-linkage and CLINK [3] for complete-linkage clusteri
Biclustering, block clustering, [1] [2] Co-clustering or two-mode clustering [3] [4] [5] is a data mining technique which allows simultaneous clustering of the rows and columns of a matrix. The term was first introduced by Boris Mirkin [ 6 ] to name a technique introduced many years earlier, [ 6 ] in 1972, by John A. Hartigan .
In the theory of cluster analysis, the nearest-neighbor chain algorithm is an algorithm that can speed up several methods for agglomerative hierarchical clustering.These are methods that take a collection of points as input, and create a hierarchy of clusters of points by repeatedly merging pairs of smaller clusters to form larger clusters.
Consensus clustering is a method of aggregating (potentially conflicting) results from multiple clustering algorithms.Also called cluster ensembles [1] or aggregation of clustering (or partitions), it refers to the situation in which a number of different (input) clusterings have been obtained for a particular dataset and it is desired to find a single (consensus) clustering which is a better ...