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Compact Letter Display (CLD) is a statistical method to clarify the output of multiple hypothesis testing when using the ANOVA and Tukey's range tests. CLD can also be applied following the Duncan's new multiple range test (which is similar to Tukey's range test).
It is developed in Java and open source. Both: Albrecht F: 2015 HMMER: Local and global search with profile Hidden Markov models, more sensitive than PSI-BLAST: Both: Durbin R, Eddy SR, Krogh A, Mitchison G [6] 1998 HH-suite: Pairwise comparison of profile Hidden Markov models; very sensitive: Protein: Söding J [7] [8] 2005/2012 IDF Inverse ...
Tukey's procedure is only applicable for pairwise comparisons. It assumes independence of the observations being tested, as well as equal variation across observations ( homoscedasticity ).
TOPS+ COMPARISON Comparing topological models of protein structures enhanced with ligand information: Topology: Pair: Yes: server: M. Veeramalai & D. Gilbert: 2008 TOPS++FATCAT Flexible Structure AlignmenT by Chaining Aligned Fragment Pairs Allowing Twists derived from TOPS+ String Model: Cα: Pair: Yes: server: M. Veeramalai et al. 2008 MolLoc
GraphPad InStat – very simple with much guidance and explanations; GraphPad Prism – biostatistics and nonlinear regression with clear explanations; Igor Pro - programming language with statistical features and numerical analysis; IMSL Numerical Libraries – software library with statistical algorithms; JMP – visual analysis and ...
Align DNA, RNA, protein, or DNA + protein sequences via a variety of pairwise and multiple sequence alignment algorithms, generate phylogenetic trees to predict evolutionary relationships, explore sequence tracks to view GC content, gap fraction, sequence logos, translation ABI, DNA Multi-Seq, FASTA, GCG Pileup, GenBank, Phred
GraphPad Prism: GraphPad Software, Inc. February 2009 () No Proprietary: GUI: gretl: The gretl Team 2024d (12 December 2024 ()) Yes GNU GPL: CLI, GUI: C hansl Jamovi: The jamovi project 2023a (14 February 2024 ()) Yes GNU GPL: GUI: C++, R, JavaScript, Python JASP: JASP team University of Amsterdam
As a result of two explicit pairwise comparisons – i.e. explicitly performed by the decision-maker – five of the six undominated pairs have been ranked. The decision-maker may cease ranking whenever she likes (before all undominated pairs are ranked), but let's suppose she continues and ranks the remaining pair (v) as a2 + b1 + c2 > a1 + b2 ...