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Typically RMSD is used as a quantitative measure of similarity between two or more protein structures. For example, the CASP protein structure prediction competition uses RMSD as one of its assessments of how well a submitted structure matches the known, target structure. Thus the lower RMSD, the better the model is in comparison to the target ...
In experimental psychology, the RMSD is used to assess how well mathematical or computational models of behavior explain the empirically observed behavior. In GIS, the RMSD is one measure used to assess the accuracy of spatial analysis and remote sensing. In hydrogeology, RMSD and NRMSD are used to evaluate the calibration of a groundwater ...
If a vector of predictions is generated from a sample of data points on all variables, and is the vector of observed values of the variable being predicted, with ^ being the predicted values (e.g. as from a least-squares fit), then the within-sample MSE of the predictor is computed as
The RMS value of a set of values (or a continuous-time waveform) is the square root of the arithmetic mean of the squares of the values, or the square of the function that defines the continuous waveform.
Essentially the CV(RMSD) replaces the standard deviation term with the Root Mean Square Deviation (RMSD). While many natural processes indeed show a correlation between the average value and the amount of variation around it, accurate sensor devices need to be designed in such a way that the coefficient of variation is close to zero, i.e ...
The match-to-sample task has been shown to be an effective tool to understand the impact of sleep deprivation on short-term memory. One research study [9] compared performance on a traditional sequential test battery with that on a synthetic work task requiring subjects to work concurrently on several tasks, testing subjects every three hours during 64 hrs of sleep deprivation.
This course is designed for students who wish to pursue an interest in the life sciences. The College Board recommends successful completion of high school biology and high school chemistry [2] before commencing AP Biology, although the actual prerequisites vary from school to school and from state to state.
TM-score between two protein structures (e.g., a template structure and a target structure) is defined by = [+ (())] where is the length of the amino acid sequence of the target protein, and is the number of residues that appear in both the template and target structures.