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In molecular biology, pseudo amino acid composition (PseACC) is a method introduced by Kuo-Chen Chou to convert the protein sequence into a numerical vector for enhancing pattern recognition techniques, such as during discrimination between classes of proteins based on their sequences (e.g. between membrane proteins, transmembrane proteins, cytosolic proteins, and other types). [1]
database of comparative protein structure models Protein model databases SIMAP: database of protein similarities computed using FASTA: Protein model databases Swiss-model: server and repository for protein structure models Protein model databases AAindex: database of amino acid indices, amino acid mutation matrices, and pair-wise contact potentials
Isobaric labeling has been successfully used for many biological applications including protein identification and quantification, protein expression profiling of normal vs abnormal states, quantitative analysis of proteins for which no antibodies are available and identification and quantification of post-translationally modified proteins. [4]
Polyacrylamide gel electrophoresis is a powerful tool used to analyze RNA samples. When polyacrylamide gel is denatured after electrophoresis, it provides information on the sample composition of the RNA species. [1] Hydration of acrylonitrile results in formation of acrylamide molecules (C 3 H 5 NO) by nitrile hydratase. [2]
TPP also does: Protein Quantification with XPRESS (calculates relative peptide/protein abundances from isotopically labeled MS/MS samples); ASAPRatio (Automated Statistical Analysis on Protein Ratio, an alternative to XPRESS); and Libra (quantification of isobarically-labeled samples (e.g. iTraq, TMT, etc.) for any number of channels).
What Are Today’s NYT Strands Answers, Word List for Monday, February 17? LEMON. CANARY. MUSTARD. SAFFRON. DAFFODIL. GOLDENROD. YELLOW (SPANGRAM) Up Next:
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