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Name Description Knots [Note 1]Links References trRosettaRNA: trRosettaRNA is an algorithm for automated prediction of RNA 3D structure. It builds the RNA structure by Rosetta energy minimization, with deep learning restraints from a transformer network (RNAformer). trRosettaRNA has been validated in blind tests, including CASP15 and RNA-Puzzles, which suggests that the automated predictions ...
The ViennaRNA Package is software, a set of standalone programs and libraries used for predicting and analysing RNA nucleic acid secondary structures. [1] The source code for the package is released as free and open-source software and compiled binaries are available for the operating systems Linux, macOS, and Windows.
The Nucleic Acid Package (NUPACK) is a growing software suite for the analysis and design of nucleic acid systems. [1] Jobs can be run online on the NUPACK webserver or NUPACK source code can be downloaded and compiled locally for non-commercial academic use. [2]
RNA-Skim RNA-Skim: a rapid method for RNA-Seq quantification at transcript-level. rSeq rSeq is a set of tools for RNA-Seq data analysis. It consists of programs that deal with many aspects of RNA-Seq data analysis, such as read quality assessment, reference sequence generation, sequence mapping, gene and isoform expressions (RPKMs) estimation, etc.
M. Zuker, implemented algorithms for computation of MFE RNA secondary structures [40] based on the work of Nussinov et al., [35] Smith and Waterman [34] and Studnicka, et al. [41] Later L. Hofacker (et al., 1994), [42] presented The Vienna RNA package, a software package that integrated MFE folding and the computation of the partition function ...
The Kansas City Chiefs were rolling to the best record in the NFL when they faced a bit of a crisis. Moving All-Pro left guard Joe Thuney a few feet over to tackle helped plug that hole. It's one ...
The Nussinov algorithm is a nucleic acid structure prediction algorithm used in computational biology to predict the folding of an RNA molecule that makes use of dynamic programming principles. [1] The algorithm was developed by Ruth Nussinov in the late 1970s.
Steve Martin got monologue duties for “SNL50: The Anniversary Special” on Sunday evening, “traditionally the weakest part of the show” he cracked. Martin was the first of many, many ...