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3D Slicer (Slicer) is a free and open source software package for image analysis [1] [2] and scientific visualization. Slicer is used in a variety of medical applications, including autism , multiple sclerosis , systemic lupus erythematosus , prostate cancer , lung cancer , breast cancer , schizophrenia , orthopedic biomechanics , COPD ...
FreeSurfer contains a set of programs with a common focus of analyzing magnetic resonance imaging (MRI) scans of brain tissue. It is an important tool in functional brain mapping and contains tools to conduct both volume based and surface based analysis. [ 4 ]
ITK-SNAP provides tools for manual delineation of anatomical structures in images. Labeling can take place in all three orthogonal cut planes and results can be visualized as a three-dimensional rendering. This makes it easier to ensure that the segmentation maintains reasonable shape in 3D. Automatic segmentation
3D Slicer Extensible, free open source multi-purpose software for visualization and analysis. Amira 3D visualization and analysis software; Analysis of Functional NeuroImages (AFNI) Analyze developed by the Biomedical Imaging Resource (BIR) at Mayo Clinic. Brain Image Analysis Package; CamBA; Caret Van Essen Lab, Washington University in St. Louis
The FMRIB Software Library, abbreviated FSL, is a software library containing image analysis and statistical tools for functional, structural and diffusion MRI brain imaging data. FSL is available as both precompiled binaries and source code for Apple and PC computers. It is freely available for non-commercial use.
It is a commercial program and is used for medical tomographic scans from magnetic resonance imaging, computed tomography and positron emission tomography. The Analyze 7.5 file format [1] has been widely used in the functional neuroimaging field, and other programs such as SPM, FreeSurfer, AIR, MRIcro and Mango are able to read and write the ...
Analysis of Functional NeuroImages (AFNI) is an open-source environment for processing and displaying functional MRI data—a technique for mapping human brain activity.. AFNI is an agglomeration of programs that can be used interactively or flexibly assembled for batch processing using shell script.
InVesalius is a free medical software used to generate virtual reconstructions of structures in the human body. Based on two-dimensional images, acquired using computed tomography or magnetic resonance imaging equipment, the software generates virtual three-dimensional models correspondent to anatomical parts of the human body.