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  2. Single-cell sequencing - Wikipedia

    en.wikipedia.org/wiki/Single-cell_sequencing

    Single-cell RNA sequencing workflow. Current scRNA-seq protocols involve isolating single cells and their RNA, and then following the same steps as bulk RNA-seq: reverse transcription (RT), amplification, library generation and sequencing. Early methods separated individual cells into separate wells; more recent methods encapsulate individual ...

  3. Single-cell transcriptomics - Wikipedia

    en.wikipedia.org/wiki/Single-cell_transcriptomics

    These fragments are sequenced by high-throughput next generation sequencing techniques and the reads are mapped back to the reference genome, providing a count of the number of reads associated with each gene. [13] Normalisation of RNA-seq data accounts for cell to cell variation in the efficiencies of the cDNA library formation and sequencing.

  4. Small conditional RNA - Wikipedia

    en.wikipedia.org/wiki/Small_conditional_RNA

    The programmability and sequence selectivity of these amplification cascades enable five scRNA amplifiers to operate independently at the same time in the same sample, each staining for expression of one of the five target mRNAs. Scale bar: 50 μm. Image from Choi et al. 2010; [2] used with permission of the Nature Publishing Group. Figure 3 ...

  5. Perturb-seq - Wikipedia

    en.wikipedia.org/wiki/Perturb-seq

    Both the large size and noise that is associated with scRNA-seq will likely require new and powerful computational methods and bioinformatics pipelines to better make sense of the resulting data. Another challenge associated with this protocol is the creation of large scale CRISPR libraries.

  6. Unique molecular identifier - Wikipedia

    en.wikipedia.org/wiki/Unique_molecular_identifier

    Download as PDF; Printable version ... added to DNA fragments in some next generation sequencing library preparation protocols to identify the ... (scRNA-seq ) [2] [3 ...

  7. RNA-Seq - Wikipedia

    en.wikipedia.org/wiki/RNA-Seq

    Single-cell RNA sequencing (scRNA-Seq) provides the expression profiles of individual cells. Although it is not possible to obtain complete information on every RNA expressed by each cell, due to the small amount of material available, patterns of gene expression can be identified through gene clustering analyses. This can uncover the existence ...

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  9. Single-cell analysis - Wikipedia

    en.wikipedia.org/wiki/Single-cell_analysis

    This single cell shows the process of the central dogma of molecular biology, which are all steps researchers are interested to quantify (DNA, RNA, and Protein).. In cell biology, single-cell analysis and subcellular analysis [1] refer to the study of genomics, transcriptomics, proteomics, metabolomics, and cell–cell interactions at the level of an individual cell, as opposed to more ...