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SymPy is an open-source Python library for symbolic computation. It provides computer algebra capabilities either as a standalone application, as a library to other applications, or live on the web as SymPy Live [2] or SymPy Gamma. [3] SymPy is simple to install and to inspect because it is written entirely in Python with few dependencies.
Matplotlib (portmanteau of MATLAB, plot, and library [3]) is a plotting library for the Python programming language and its numerical mathematics extension NumPy.It provides an object-oriented API for embedding plots into applications using general-purpose GUI toolkits like Tkinter, wxPython, Qt, or GTK.
Programmable, direct support of 2D+3D plotting. Interfaces to many other software packages. Interfacing to external modules written in C, Java, Python or other languages. Language syntax similar to MATLAB. Used for numerical computing in engineering and physics. Smath Studio: SMath LLC (Andrey Ivashov) 2006 1.0.8348 11 September 2022: Free
Moreover, complementary Python packages are available; SciPy is a library that adds more MATLAB-like functionality and Matplotlib is a plotting package that provides MATLAB-like plotting functionality. Although matlab can perform sparse matrix operations, numpy alone cannot perform such operations and requires the use of the scipy.sparse library.
is how one would use Fortran to create arrays from the even and odd entries of an array. Another common use of vectorized indices is a filtering operation. Consider a clipping operation of a sine wave where amplitudes larger than 0.5 are to be set to 0.5. Using S-Lang, this can be done by y = sin(x); y[where(abs(y)>0.5)] = 0.5;
NumPy, a language extension that adds support for large and fast, multi-dimensional arrays and matrices; Plotly is a scientific plotting library for creating browser-based graphs. SageMath is a large mathematical software application which integrates the work of nearly 100 free software projects. SymPy, a symbolic mathematical calculations package
scikit-learn (formerly scikits.learn and also known as sklearn) is a free and open-source machine learning library for the Python programming language. [3] It features various classification, regression and clustering algorithms including support-vector machines, random forests, gradient boosting, k-means and DBSCAN, and is designed to interoperate with the Python numerical and scientific ...
A common method for evaluating how well normalized an array is, is to plot an MA plot of the data. MA plots can be produced using programs and languages such as R and MATLAB. [6] [7] Raw Affy data contains about twenty probes for the same RNA target. Half of these are "mismatch spots", which do not precisely match the target sequence.