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Gramps uses Graphviz to create genealogical (family tree) diagrams. Graph-tool a Python library for graph manipulation and visualization. OmniGraffle version 5 and later uses the Graphviz engine, with a limited set of commands, for automatically laying out graphs. [9] Org-mode can work with DOT source code blocks. [10]
An integrated software environment for tree visualisation and annotation: LM [19] Archaeopteryx: Java tree viewer and editor (used to be ATV) [20] BioNumerics: Universal platform for the management, storage and analysis of all types of biological data, including tree and network inference of sequence data: W [21] Dendroscope
MicrobeTrace is a free, browser-based web application. 2D and 3D network visualization tool, Neighbor-joining tree visualization, Gantt charts, bubbles charts, networks visualized on maps, flow diagrams, aggregate tables, epi curves, histograms, alignment viewer, and much more.
FreeCAD is free and open-source, under the LGPL-2.0-or-later license, and available for Linux, macOS, and Windows operating systems. Users can extend the functionality of the software using the Python programming language.
Includes glossary, data dictionary, and issue tracking. Supports use case diagrams, auto-generated flow diagrams, screen mock-ups, and free-form diagrams. clang-uml: Unknown Unknown Unknown Unknown No C++ PlantUML, Mermaid.js Generate PlantUML and Mermaild.js diagrams from existing C++ codebase. Dia: Partly No No No
diagrams.net (previously draw.io [2] [3]) is a cross-platform graph drawing software application developed in HTML5 and JavaScript. [4] Its interface can be used to create diagrams such as flowcharts , wireframes , UML diagrams, organizational charts , and network diagrams .
Attack tree, conceptual diagrams showing how a target might be attacked; Fault tree diagram, diagram used in deductive failure analysis in various industries; Program structure tree, hierarchical diagram that displays the organization of a computer program; Treemapping, a method for displaying hierarchical data using nested figures, usually ...
Also supports Python and Java; doxygen : Uses Graphviz to generate static call/inheritance diagrams; Cally: a tool that uses GCC's Register Transfer Language (RTL) files to build a caller or callee call graphs for C projects. cflow : GNU cflow is able to generate the direct and inverted call graph of a C program