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An integrated software environment for tree visualisation and annotation: LM [19] Archaeopteryx: Java tree viewer and editor (used to be ATV) [20] BioNumerics: Universal platform for the management, storage and analysis of all types of biological data, including tree and network inference of sequence data: W [21] Dendroscope
Fast ML tree reconstruction, bootstrap analysis, model selection, hypothesis testing, tree calibration, tree manipulation and visualization, computation of sitewise rates, sequence simulation, many models of evolution (DNA, protein, rRNA, mixed protein, user-definable), GUI and scripting language: Maximum likelihood, distances, and others
Gramps, formerly GRAMPS (an acronym for Genealogical Research and Analysis Management Programming System), [2] is a free and open-source genealogy software. [9] It is developed in Python using PyGObject and utilizes Graphviz to create relationship graphs.
In 2011, the company started publishing its hosted service for the mxGraph web application under a separate brand, Diagramly with the domain "diagram.ly". [12]After removing the remaining use of Java applets from its web app, the service rebranded as draw.io in 2012 because the ".io suffix is a lot cooler than .ly", said co-founder David Benson in a 2012 interview.
Supports following UML diagrams: Use case diagram, Sequence diagram, Collaboration diagram, Class diagram, Statechart diagram, Activity diagram, Component diagram, Deployment diagram and Package diagram Rational Rhapsody: Yes Yes Yes Yes C++, C, Java, Ada, Corba, Customizable for other languages C++, C, Java, Ada, Customizable for other languages
Python Any 2013 1.0.1 (2021) Unlicense (PD) perldoc: Larry Wall: Text Perl Any 1994 5.16.3 Artistic, GPL phpDocumentor: Joshua Eichorn Text PHP Any 2000 3.0.0 LGPL for 1.x, MIT for 2+ pydoc: Ka-Ping Yee [1] Text Python Any 2000 in Python core Python: RDoc: Dave Thomas Text C, C++, Ruby Any 2001/12/14 in Ruby core Ruby: ROBODoc: Frans Slothouber ...
The original tree is converted to a binary tree: each node with more than two children is replaced by a sub-tree in which each node has exactly two children. Each region representing a node (starting from the root) is divided to two, using a line that keeps the angles between edges as large as possible.
The Open Tree of Life is an online phylogenetic tree of life – a collaborative effort, funded by the National Science Foundation. [2] [3] The first draft, including 2.3 million species, was released in September 2015. [4] The Interactive graph allows the user to zoom in to taxonomic classifications, phylogenetic trees, and information about a ...