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A GraphML file consists of an XML file containing a graph element, within which is an unordered sequence of node and edge elements. Each node element should have a distinct id attribute, and each edge element has source and target attributes that identify the endpoints of an edge by having the same value as the id attributes of those endpoints.
DOT is a graph description language, developed as a part of the Graphviz project. DOT graphs are typically stored as files with the .gv or .dot filename extension — .gv is preferred, to avoid confusion with the .dot extension used by versions of Microsoft Word before 2007.
Older (.OPJ), but not newer (.OPJU), Origin project files can be read by the open-source LabPlot or SciDAVis software. The files can also be read by QtiPlot but only with a paid "Pro" version. Finally the liborigin [1] library can also read .OPJ files such as by using the opj2dat script, which exports the data tables contained in the file.
MATLAB (an abbreviation of "MATrix LABoratory" [22]) is a proprietary multi-paradigm programming language and numeric computing environment developed by MathWorks.MATLAB allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces, and interfacing with programs written in other languages.
It offers expanded authentication and file export options, and does not limit sharing and viewing. [14] Data visualization libraries Plotly.js is an open-source JavaScript library for creating graphs and powers Plotly.py for Python, as well as Plotly.R for R, MATLAB, Node.js, Julia, and Arduino and a REST API.
It provides a rich Excel-like user interface and its built-in vector programming language FPScript has a syntax similar to MATLAB. FreeMat, an open-source MATLAB-like environment with a GPL license. GNU Octave is a high-level language, primarily intended for numerical computations. It provides a convenient command-line interface for solving ...
igraph, an open source network analysis library with interfaces to multiple programming languages. Gephi, an open source graph visualization and manipulation software. Graph-tool, a free Python module for manipulation and statistical analysis of graphs. NetworkX, an open source Python library for studying complex graphs.
Graphviz (short for Graph Visualization Software) is a package of open-source tools initiated by AT&T Labs Research for drawing graphs (as in nodes and edges, not as in bar charts) specified in DOT language scripts having the file name extension "gv". It also provides libraries for software applications to use the tools.