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  2. Variant Call Format - Wikipedia

    en.wikipedia.org/wiki/Variant_Call_Format

    The Variant Call Format or VCF is a standard text file format used in bioinformatics for storing gene sequence or DNA sequence variations. The format was developed in 2010 for the 1000 Genomes Project and has since been used by other large-scale genotyping and DNA sequencing projects.

  3. File:How random DNA libraries sample sequence space.pdf

    en.wikipedia.org/wiki/File:How_random_DNA...

    English: Depiction of how DNA libraries created by random diversity-generation techniques sample the sequence space. The amino acid substituted into a given position is shown. The amino acid substituted into a given position is shown.

  4. CRAM (file format) - Wikipedia

    en.wikipedia.org/wiki/CRAM_(file_format)

    Compressed Reference-oriented Alignment Map (CRAM) is a compressed columnar file format for storing biological sequences aligned to a reference sequence, initially devised by Markus Hsi-Yang Fritz et al. [1] CRAM was designed to be an efficient reference-based alternative to the Sequence Alignment Map (SAM) and Binary Alignment Map (BAM) file ...

  5. General feature format - Wikipedia

    en.wikipedia.org/wiki/General_feature_format

    In bioinformatics, the general feature format (gene-finding format, generic feature format, GFF) is a file format used for describing genes and other features of DNA, RNA and protein sequences. GFF Versions

  6. Nexus file - Wikipedia

    en.wikipedia.org/wiki/Nexus_file

    The extensible NEXUS file format is widely used in bioinformatics.It stores information about taxa, morphological and molecular characters, distances, genetic codes, assumptions, sets, trees, etc. [1] Several popular phylogenetic programs such as PAUP*, [2] MrBayes, [3] Mesquite, [4] MacClade [5] and SplitsTree [6] use this format.

  7. SAM (file format) - Wikipedia

    en.wikipedia.org/wiki/SAM_(file_format)

    The SAM format consists of a header and an alignment section. [1] The binary equivalent of a SAM file is a Binary Alignment Map (BAM) file, which stores the same data in a compressed binary representation. [4] SAM files can be analysed and edited with the software SAMtools. [1] The header section must be prior to the alignment section if it is ...

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    mail.aol.com

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  9. BED (file format) - Wikipedia

    en.wikipedia.org/wiki/BED_(file_format)

    The BED (Browser Extensible Data) format is a text file format used to store genomic regions as coordinates and associated annotations. The data are presented in the form of columns separated by spaces or tabs. This format was developed during the Human Genome Project [1] and then adopted by other sequencing