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2. Gpm (proteomics) - Wikipedia

   en.wikipedia.org/wiki/Gpm_(proteomics)

   It is a web-based, open source user interface for analyzing and displaying protein identification data. It was originally designed by Rob Craig and Ron Beavis and first released in 2003. [ 1 ] The interface creates a series of web browser page views of tandem mass spectrometry data that has been assigned to protein sequences.

3. Protein Data Bank (file format) - Wikipedia

   en.wikipedia.org/wiki/Protein_Data_Bank_(file...

   The Protein Data Bank (PDB) file format is a textual file format describing the three-dimensional structures of molecules held in the Protein Data Bank, now succeeded by the mmCIF format. The PDB format accordingly provides for description and annotation of protein and nucleic acid structures including atomic coordinates, secondary structure ...

4. PRINTS - Wikipedia

   en.wikipedia.org/wiki/PRINTS

   A fingerprint is a group of conserved motifs taken from a multiple sequence alignment - together, the motifs form a characteristic signature for the aligned protein family. The motifs themselves are not necessarily contiguous in sequence, but may come together in 3D space to define molecular binding sites or interaction surfaces.

5. UniProt - Wikipedia

   en.wikipedia.org/wiki/UniProt

   UniProt Archive (UniParc) is a comprehensive and non-redundant database, which contains all the protein sequences from the main, publicly available protein sequence databases. [17] Proteins may exist in several different source databases, and in multiple copies in the same database.

6. Sequence logo - Wikipedia

   en.wikipedia.org/wiki/Sequence_logo

   A consensus logo is a simplified variation of a sequence logo that can be embedded in text format. Like a sequence logo, a consensus logo is created from a collection of aligned protein or DNA/RNA sequences and conveys information about the conservation of each position of a sequence motif or sequence alignment [1] [4].

7. Human Protein Reference Database - Wikipedia

   en.wikipedia.org/wiki/Human_Protein_Reference...

   The Human Protein Reference Database (HPRD) is a protein database accessible through the Internet. [1] It is closely associated with the premier Indian Non-Profit research organisation Institute of Bioinformatics (IOB), Bangalore, India. This database is a collaborative output of IOB and the Pandey Lab of Johns Hopkins University.

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9. Mascot (software) - Wikipedia

   en.wikipedia.org/wiki/Mascot_(software)

   Mascot identifies proteins by interpreting mass spectrometry data. The prevailing experimental method for protein identification is a bottom-up approach, where a protein sample is typically digested with trypsin to form smaller peptides. While most proteins are too large, peptides usually fall within the limited mass range that a typical mass ...