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The atomic nucleus shown expanded more than 10,000 times its size relative to the atom; electrons have no measurable diameter. 3D animation of an atom incorporating the Rutherford model. The atomic nucleus shown expanded more than 10,000 times its size relative to the atom; electrons have no measurable diameter.
Coot can be used to read files containing 3D atomic coordinate models of macromolecular structures in a number of formats, including pdb, mmcif, and Shelx files. The model may then be rotated in 3D and viewed from any viewpoint. The atomic model is represented by default using a stick-model, with vectors representing chemical bonds.
The construction of physical models is often a creative act, and many bespoke examples have been carefully created in the workshops of science departments. There is a very wide range of approaches to physical modeling, including ball-and-stick models available for purchase commercially, to molecular models created using 3D printers. The main ...
3D model of atomic structure (direct space), simulated diffraction pattern (reciprocal space), stereographic projection (projection of 3D space of crystallographic planes and directions to 2D), inverse pole figure (defined part of stereographic projection). Graphical user interface provides user with two interactive views side by side. These ...
Atomic orbitals are basic building blocks of the atomic orbital model (or electron cloud or wave mechanics model), a modern framework for visualizing submicroscopic behavior of electrons in matter. In this model, the electron cloud of an atom may be seen as being built up (in approximation) in an electron configuration that is a product of ...
In a simulation, the potential energy of an atom, , is given by [3] = (()) + (), where is the distance between atoms and , is a pair-wise potential function, is the contribution to the electron charge density from atom of type at the location of atom , and is an embedding function that represents the energy required to place atom of type into the electron cloud.
A space-filling model of n-octane, the straight chain (normal) hydrocarbon composed of 8 carbons and 18 hydrogens, formulae: CH 3 CH 2 (CH 2) 4 CH 2 CH 3 or C 8 H 18.Note, the representative shown is of a single conformational "pose" of a population of molecules, which, because of low Gibbs energy barriers to rotation about its carbon-carbon bonds (giving the carbon "chain" great flexibility ...
The category of quantum models encompasses a variety of exactly solvable problems in quantum mechanics. Each exactly solvable problem is of interest for several reasons. It provides a test case for methods applicable to other problems. It can be used as a starting point for perturbation theory.