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Software tools for molecular design-Tinker-OpenMM [6] Software tools for molecular design-Tinker-HP [7] Proprietary, gratis Washington University: UCSF Chimera: Yes Yes Yes No No No No No No Visually appealing viewer, amino acid rotamers and other building, includes Antechamber and MMTK, Ambertools plugins in development. Proprietary, free ...
Following is a list of notable software, computer programs, used to develop a mathematical representation of any three dimensional surface of objects, as 3D computer graphics, also called 3D modeling.
Molecular design software; Molecule editor; Quantum chemistry computer programs; List of molecular graphics systems; List of protein structure prediction software; List of sequence alignment software; List of gene prediction software; List of RNA structure prediction software; Comparison of software for molecular mechanics modeling
FreeCAD is a general-purpose parametric 3D computer-aided design (CAD) modeler and a building information modeling (BIM) software application with finite element method (FEM) support. [4] It is intended for mechanical engineering product design but also expands to a wider range of uses around engineering, such as architecture or electrical ...
ExtendSim - simulation software for discrete event, continuous, discrete rate and agent-based simulation. FEATool Multiphysics - finite element physics and PDE simulation toolbox for MATLAB. Flexsim - discrete event simulation software. Flood Modeller - hydraulic simulation software, used to model potential flooding risk for engineering purposes.
Aqsis is a free and open-source rendering suite compliant with the RenderMan standard. AutoQ3D Community is not a professional CAD program and it is focused to beginners who want to make rapid 3D designs. It is a free software package developed under the GPL. [2] It has a commercial sibling called AutoQ3D CAD. [3] gap
List of free analog and digital electronic circuit simulators, available for Windows, macOS, Linux, and comparing against UC Berkeley SPICE. The following table is split into two groups based on whether it has a graphical visual interface or not.
Emsley is the primary author of the model-building software Coot, [3] [4] a tool for building models of proteins whose three dimensional structures are determined via X-ray crystallography or cryo-EM. These protein structures are deposited at the Worldwide Protein Data Bank for collaboration among scientists. [5]