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The germline pipeline operates on the FASTQ files provided as input by the user to call the variants that, belonging to the germ line, can be inherited. [ 13 ] This pipeline analyzes data computing the read alignment with BWA-MEM [ 16 ] [ 17 ] and calling variants using GATK HaplotypeCaller, [ 18 ] one of the most relevant tools in the domain ...
In germline cells, ROS are likely a significant cause of DNA damages that, upon DNA replication, lead to mutations. 8-Oxoguanine, an oxidized derivative of guanine, is produced by spontaneous oxidation in the germline cells of mice, and during the cell's DNA replication cause GC to TA transversion mutations. [17]
The mutation frequency of female germline cells in mice is about 5-fold lower than that of somatic cells, according to one study. [13] The mouse oocyte in the dictyate (prolonged diplotene) stage of meiosis actively repairs DNA damage, whereas DNA repair was not detected in the pre-dictyate (leptotene, zygotene and pachytene) stages of meiosis ...
In 2004, considerable evidence was provided for the existence of germline stem cells in adult mouse ovaries capable of generating oocytes to form new follicles. [11] [12] [13] Questions exist about cell-sorting techniques used to isolate the OSCs, [14] and some researchers prefer the less-conclusive term "female germline stem cells" to "OSCs". [15]
Mammalian PGCs are specified by signalling between cells (induction), rather than by the segregation of germ plasm as the embryo divides. [6] In mice, PGCs originate from the proximal epiblast, close to the extra-embryonic ectoderm (ExE), of the post-implantation embryo as early as embryonic day 6.5. [7]
Germline stem cells (GSCs) are found in organisms that continuously produce sperm and eggs until they are sterile. These specialized stem cells reside in the GSC niche, the initial site for gamete production, which is composed of the GSCs, somatic stem cells, and other somatic cells.
In female mice, the epigenetic signal is maintained through the F2 generation as a result of the exposure of the germline in the womb. [4] Many epigenetic signals are lost beyond the F2/F3 generation and are no longer inherited, because the subsequent generations were not exposed to the same environment as the parental generations. [ 3 ]
In addition, stem cell are undifferentiated cells which can develop into a specialized cell and are the earliest type of cell in a cell lineage. [2] Due to the differentiation in function, somatic cells are found only in multicellular organisms, as in unicellular ones the purposes of somatic and germ cells are consolidated in one cell.