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High-performance general purpose sequence similarity search tool: Both: 2009/2014 LAMBDA High performance local aligner compatible to BLAST, but much faster; supports SAM/BAM: Protein: Hannes Hauswedell, Jochen Singer, Knut Reinert [9] 2014 MMseqs2 Software suite to search and cluster huge sequence sets.
A n−1, and target value T, the following subroutine uses a multiplicative binary search to find the index of T in A. Set i to 0; if i ≥ n, the search terminates unsuccessfully. if A i = T, the search is done; return i. if A i > T, set i to 2×i + 1 and go to step 2. if A i < T, set i to 2×i + 2 and go to step 2.
Desktop search product with Outlook plugin and limited support for other formats via IFilters, uses Lucene search engine. Proprietary (14-day trial) [7] Nepomuk: Linux: Open-source semantic desktop search tool for Linux. Has been replaced by Baloo in KDE Applications from release 4.13 onward. License SA 3.0 and the GNU Free Documentation ...
Regardless of the file system used on the indexed drives and folders, Everything searches its index for file names matching a user search expression, which may be a fragment of the target file name or a regular expression, [9] displaying intermediate and immediate results as the search term is entered.
The time to complete the search increases linearly as the size of the database increases. MPIblast utilizes parallel processing to speed up the search. The ideal speed for any parallel computation is a complexity of O(n/p), with n being the size of the database and p being the number of processors. This would indicate that the job is evenly ...
In addition to rapid heuristic search methods, the FASTA package provides SSEARCH, an implementation of the optimal Smith–Waterman algorithm. A major focus of the package is the calculation of accurate similarity statistics, so that biologists can judge whether an alignment is likely to have occurred by chance, or whether it can be used to ...
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A sequence profiling tool in bioinformatics is a type of software that presents information related to a genetic sequence, gene name, or keyword input. Such tools generally take a query such as a DNA, RNA, or protein sequence or ‘keyword’ and search one or more databases for information related to that sequence.