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Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.
In the Ensembl project, sequence data are fed into the gene annotation system (a collection of software "pipelines" written in Perl) which creates a set of predicted gene locations and saves them in a MySQL database for subsequent analysis and display. Ensembl makes these data freely accessible to the world research community.
The Browser is a graphical viewer optimized to support fast interactive performance and is an open-source, web-based tool suite built on top of a MySQL database for rapid visualization, examination, and querying of the data at many levels. The Genome Browser Database, browsing tools, downloadable data files, and documentation can all be found ...
Another example is a research study on synthetic lethality in cancer. Synthetic lethality appears when a mutation in a single gene has no effect on the function of a cell but a mutation in an additional gene leads to cell death. This study aimed to find novel methods of treating cancer through blocking the lethality of drugs.
The following versions of GFF exist: General Feature Format Version 2, generally deprecated . Gene Transfer Format 2.2, a derivative used by Ensembl; Generic Feature Format Version 3
GPU-accelerated, in-memory, distributed database for analytics. Functions like a RDBMS (structured data) for fast analytics on datasets in the hundreds of GBs to tens of TBs range. Interact with SQL and REST API. Geospatial objects and functions. UDF framework allows for custom code and machine learning workloads to run in-database. Received ...
In the table, I've broken down the annual revenue growth rates for each of AMD's and Nvidia's respective data center businesses: Category. Q3 2023. Q4 2023. Q1 2024. Q2 2024. Q3 2024.
12167 Ensembl ENSG00000138696 ENSMUSG00000052430 UniProt O00238 P36898 RefSeq (mRNA) NM_001203 NM_001256792 NM_001256793 NM_001256794 NM_001277216 NM_001277217 NM_001277218 NM_001277220 NM_007560 NM_001355043 RefSeq (protein) NP_001194 NP_001243721 NP_001243722 NP_001243723 NP_001264145 NP_001264146 NP_001264147 NP_001264149 NP_031586 NP_001341972 Location (UCSC) Chr 4: 94.76 – 95.16 Mb Chr ...