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Arlequin is a free population genetics software distributed as an integrated GUI data analysis software. [1] It performs several types of tests and calculations, including Fixation index (F st, also known as the "F-statistics" [2]), computing genetic distance, Hardy–Weinberg equilibrium, linkage disequilibrium, analysis of molecular variance, mismatch distribution, and pairwise difference tests.
Bayesian Analysis of Trees With Internal Node Generation: Bayesian inference, demographic history, population splits: I. J. Wilson, Weale, D.Balding BayesPhylogenies [8] Bayesian inference of trees using Markov chain Monte Carlo methods: Bayesian inference, multiple models, mixture model (auto-partitioning) M. Pagel, A. Meade BayesTraits [9]
A computer-assisted design (CAD) tool for synthetic biology, used to design genetic constructs based on grammar rules. Linux, macOS, Windows: Apache License 2.0 GenoCAD Team (Virginia Bioinformatics Institute) Genomespace: Centralized web application that provides data format transformations and facilitates connections with other bioinformatics ...
Mondrian – data analysis tool using interactive statistical graphics with a link to R; Neurophysiological Biomarker Toolbox – Matlab toolbox for data-mining of neurophysiological biomarkers; OpenBUGS; OpenEpi – A web-based, open-source, operating-independent series of programs for use in epidemiology and statistics based on JavaScript and ...
FASDA (Fast And Simple Differential Analysis) is a fast and memory-efficient differential analysis tool written in C, following object-oriented design and strict code-quality practices. It takes SAM/BAM/CRAM or kallisto abundance files directly as input, and produces fold-changes and exact P-values for up to 5 replicates, near-exact P-values ...
Asahikawa (旭川市, Asahikawa-shi) is a city in Kamikawa Subprefecture, Hokkaido, Japan. It is the capital of the subprefecture, and the second-largest city in Hokkaido, after Sapporo. [1] [2] It has been a core city since April 1, 2000. The city is currently well known for the Asahiyama Zoo, the Asahikawa ramen and a Ski resort city.
Tajima's D is a population genetic test statistic created by and named after the Japanese researcher Fumio Tajima. [1] Tajima's D is computed as the difference between two measures of genetic diversity: the mean number of pairwise differences and the number of segregating sites, each scaled so that they are expected to be the same in a neutrally evolving population of constant size.
In population genetics, the Watterson estimator is a method for describing the genetic diversity in a population. It was developed by Margaret Wu and G. A. Watterson in the 1970s. [1] [2] It is estimated by counting the number of polymorphic sites. It is a measure of the "population mutation rate" (the product of the effective population size ...