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DESeq2 employs statistical methods to normalize and analyze RNA-seq data, making it a valuable tool for researchers studying gene expression patterns and regulation. It is available through the Bioconductor repository. It was first presented in 2014. [1] As of September 2023, its use has been cited over 30,000 times. [2]
fastqp Simple FASTQ quality assessment using Python. Kraken: [9] A set of tools for quality control and analysis of high-throughput sequence data. HTSeq [10] The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful plots to assess the technical quality of a run.
Interleaf PrinterLeaf / WorldView document format (now Broadvision QuickSilver) 6E 2B 31 00: n+1: 344 nii Single file NIfTI format, used extensively in biomedical imaging. 6E 69 31 00: ni1: 344 hdr Header file of a .hdr/.img pair in NIfTI format, used extensively in biomedical imaging. 52 41 46 36 34: RAF64: 0 Report Builder file from Digital ...
An abstract rewriting system is strongly normalizing, terminating, noetherian, or has the (strong) normalization property (SN), if each of its objects is strongly normalizing. [ 2 ] A rewriting system has the normal form property (NF) if for all objects a and normal forms b , b can be reached from a by a series of rewrites and inverse rewrites ...
A Canonical XML document is by definition an XML document that is in XML Canonical form, defined by The Canonical XML specification. Briefly, canonicalization removes whitespace within tags, uses particular character encodings, sorts namespace references and eliminates redundant ones, removes XML and DOCTYPE declarations, and transforms ...
Sphinx converts reStructuredText files into HTML websites and other formats including PDF, EPub, Texinfo and man.. reStructuredText is extensible, and Sphinx exploits its extensible nature through a number of extensions – for autogenerating documentation from source code, writing mathematical notation or highlighting source code, etc.
Beyond preprocessing raw MS data to remove noise, normalize intensities, and detect peaks and converting proprietary file formats (e.g., RAW) to open-source formats (mzML, mzXML) for compatibility with downstream analysis tools, other analytical steps include peptide identification, peptide quantification, protein inference and quantification ...
reStructuredText (RST, ReST, or reST) is a file format for textual data used primarily in the Python programming language community for technical documentation.. It is part of the Docutils project of the Python Doc-SIG (Documentation Special Interest Group), aimed at creating a set of tools for Python similar to Javadoc for Java or Plain Old Documentation (POD) for Perl.