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In computer science, a substring index is a data structure which gives substring search in a text or text collection in sublinear time. Once constructed from a document or set of documents, a substring index can be used to locate all occurrences of a pattern in time linear or near-linear in the pattern size, with no dependence or only logarithmic dependence on the document size.
Common examples of array slicing are extracting a substring from a string of characters, the "ell" in "hello", extracting a row or column from a two-dimensional array, or extracting a vector from a matrix. Depending on the programming language, an array slice can be made out of non-consecutive elements.
String functions are used in computer programming languages to manipulate a string or query information about a string (some do both).. Most programming languages that have a string datatype will have some string functions although there may be other low-level ways within each language to handle strings directly.
The variable z is used to hold the length of the longest common substring found so far. The set ret is used to hold the set of strings which are of length z. The set ret can be saved efficiently by just storing the index i, which is the last character of the longest common substring (of size z) instead of S[i-z+1..i].
A prefix of S is a substring S[1..i] for some i in range [1, l], where l is the length of S. A suffix of S is a substring S[i..l] for some i in range [1, l], where l is the length of S. An alignment of P to T is an index k in T such that the last character of P is aligned with index k of T.
In computer science, an FM-index is a compressed full-text substring index based on the Burrows–Wheeler transform, with some similarities to the suffix array.It was created by Paolo Ferragina and Giovanni Manzini, [1] who describe it as an opportunistic data structure as it allows compression of the input text while still permitting fast substring queries.
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A basic example of string searching is when the pattern and the searched text are arrays of elements of an alphabet Σ. Σ may be a human language alphabet, for example, the letters A through Z and other applications may use a binary alphabet (Σ = {0,1}) or a DNA alphabet (Σ = {A,C,G,T}) in bioinformatics .