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A variety of file formats are supported for reading and writing, including Newick, NEXUS and phyloXML. Common tree manipulations and traversals are supported via the Tree and Clade objects. Examples include converting and collating tree files, extracting subsets from a tree, changing a tree's root, and analysing branch features such as length ...
Experiments maintain a link to the commit in the current branch (Git HEAD) [31] as their parent or baseline. However, they do not form part of the regular Git tree (unless they are made persistent). [32] This stops temporary commits and branches from overflowing a user's repository. Common use cases [33] for experiments are:
If the same file has been renamed on both branches then there is a rename conflict that the user must resolve. Symbolic links: describes whether a system allows revision control of symbolic links as with regular files. Versioning symbolic links is considered by some people a feature and some people a security breach (e.g., a symbolic link to ...
git add [file], which adds a file to git's working directory (files about to be committed). git commit -m [commit message], which commits the files from the current working directory (so they are now part of the repository's history). A .gitignore file may be created in a Git repository as a plain text file.
GitHub (/ ˈ ɡ ɪ t h ʌ b /) is a proprietary developer platform that allows developers to create, store, manage, and share their code. It uses Git to provide distributed version control and GitHub itself provides access control, bug tracking, software feature requests, task management, continuous integration, and wikis for every project. [8]
Python ABAP, Apex, CSS, COBOL, Flex, Go, HTML, PHP, PLI, PL/SQL, Ruby, Swift, TSQL, Visual Basic 6, XML A continuous inspection engine that finds vulnerabilities, bugs and code smells. Also tracks code complexity, unit test coverage and duplication. Offers branch analysis and C/C++/Objective-C support via commercial licenses. SourceMeter
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git checkout --track creates a local branch from a remote branch, links them, and replaces the current working files with files from that branch. git fetch downloads changes from a remote repository into the local clone git reset makes the current branch point to some specific revision or branch. git reset --hard makes the current branch point ...