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Model quality declines with decreasing sequence identity; a typical model has ~1–2 Å root mean square deviation between the matched C α atoms at 70% sequence identity but only 2–4 Å agreement at 25% sequence identity. However, the errors are significantly higher in the loop regions, where the amino acid sequences of the target and ...
The primary square is obtained by rotating the root square counter-clockwise by 90 degrees, and replacing the numbers. The resulting square is an associative magic square, in which every pair of numbers symmetrically opposite to the center sum up to the same value, 26. For e.g., 16+10, 3+23, 6+20, etc.
As an illustration of this, the parity cycle (1 1 0 0 1 1 0 0) and its sub-cycle (1 1 0 0) are associated to the same fraction 5 / 7 when reduced to lowest terms. In this context, assuming the validity of the Collatz conjecture implies that (1 0) and (0 1) are the only parity cycles generated by positive whole numbers (1 and 2 ...
The first block is a unit block and the dashed line represents the infinite sum of the sequence, a number that it will forever approach but never touch: 2, 3/2, and 4/3 respectively. A geometric progression, also known as a geometric sequence, is a mathematical sequence of non-zero numbers where each term after the first is found by multiplying ...
A codon tablecan be used to translate a genetic codeinto a sequence of amino acids. [1][2]The standard genetic code is traditionally represented as an RNAcodon table, because when proteinsare made in a cellby ribosomes, it is messenger RNA(mRNA) that directs protein synthesis. [2][3]The mRNA sequence is determined by the sequence of genomic DNA.[4]
The offset is the index of the first term given. For some sequences, the offset is obvious. For example, if we list the sequence of square numbers as 0, 1, 4, 9, 16, 25 ..., the offset is 0; while if we list it as 1, 4, 9, 16, 25 ..., the offset is 1. The default offset is 0, and most sequences in the OEIS have offset of either 0 or 1.
By convention, the coding strand is the strand used when displaying a DNA sequence. It is presented in the 5' to 3' direction. Wherever a gene exists on a DNA molecule, one strand is the coding strand (or sense strand), and the other is the noncoding strand (also called the antisense strand, [3] anticoding strand, template strand or transcribed ...
SAM (file format) Sequence Alignment Map (SAM) is a text-based format originally for storing biological sequences aligned to a reference sequence developed by Heng Li and Bob Handsaker et al. [1] It was developed when the 1000 Genomes Project wanted to move away from the MAQ mapper format and decided to design a new format.