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recursiveCorPlot Correlation based clustering for RNA-seq data (+ ggplot corrplot-like interface - R-package: recursiveCorPlot). [66] RNAeXpress Can be run with Java GUI or command line on Mac, Windows, and Linux. It can be configured to perform read counting, feature detection or GTF comparison on mapped rnaseq data.
The Biopython project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. [ 1 ] [ 4 ] [ 5 ] It contains classes to represent biological sequences and sequence annotations , and it is able to read and write to a variety of file formats.
Yahoo! Groups uses Python "to maintain its discussion groups" [citation needed] YouTube uses Python "to produce maintainable features in record times, with a minimum of developers" [25] Enthought uses Python as the main language for many custom applications in Geophysics, Financial applications, Astrophysics, simulations for consumer product ...
MOM or maximum oligonucleotide mapping is a query matching tool that captures a maximal length match within the short read. Yes MOSAIK: Fast gapped aligner and reference-guided assembler. Aligns reads using a banded Smith-Waterman algorithm seeded by results from a k-mer hashing scheme. Supports reads ranging in size from very short to very ...
Project Jupyter's name is a reference to the three core programming languages supported by Jupyter, which are Julia, Python and R. Its name and logo are an homage to Galileo's discovery of the moons of Jupiter, as documented in notebooks attributed to Galileo. Jupyter is financially sponsored by NumFOCUS. [1]
Spyder is extensible with first-party and third-party plugins, [8] and includes support for interactive tools for data inspection and embeds Python-specific code quality assurance and introspection instruments, such as Pyflakes, Pylint [9] and Rope. [10] [11] Spyder uses Qt for its GUI and is designed to use either of the PyQt or PySide Python ...
ggplot2 is an open-source data visualization package for the statistical programming language R.Created by Hadley Wickham in 2005, ggplot2 is an implementation of Leland Wilkinson's Grammar of Graphics—a general scheme for data visualization which breaks up graphs into semantic components such as scales and layers. ggplot2 can serve as a replacement for the base graphics in R and contains a ...
Tool Supported data models (conceptual, logical, physical) Supported notations Forward engineering Reverse engineering Model/database comparison and synchronization Teamwork/repository Database Workbench: Conceptual, logical, physical IE (Crow’s foot) Yes Yes Update database and/or update model No Enterprise Architect