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There are several models of the branching order of bacterial phyla, one of these is the Genome Taxonomy Database (GTDB). The GTDB is an initiative to establish a standardised microbial taxonomy based on genome phylogeny, primarily funded by an Australian Research Council Laureate Fellowship.
An online version of the taxonomic outline of bacteria and archaea (TOBA) is available Main article: LPSN List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database based on the International Code of Nomenclature of Prokaryotes which currently contains over two thousand accepted names with their references, etymologies ...
This article lists the orders of the Bacteria.The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI) [2] and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project.
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to resolving paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, updating names in both cases ...
BacDive (The Bacterial Diversity Database) is the worldwide largest database for standardized bacterial and archaeal strain-level information. Bac Dive is a comprehensive resource containing diverse data on bacterial and archaeal strains, including taxonomy, morphology, physiology, sampling and environmental data and sequence information.
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, [1] following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes. [2] The database was curated from 1997 to June 2013 by Jean P. Euzéby. [3]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [1] and National Center for Biotechnology Information (NCBI). [2] However many taxonomic names are taken from the GTDB release 08-RS214 (28 April 2023).
'The All-Species Living Tree' Project logo ' The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB, SILVA rRNA database project, and LPSN, with the aim of assembling a database of 16S rRNA sequences of all validly published species of Bacteria and Archaea. [1]