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In 2024, OpenMS 3.0 [3] was released, providing support for a wide array of data analysis task in proteomics, metabolomics and MS-based transcriptomics. OpenMS is currently developed with contributions from the group of Knut Reinert [ 13 ] at the Free University of Berlin , the group of Oliver Kohlbacher [ 14 ] at the University of Tübingen ...
The metabolite structure data is linked to chemical databases, including ChemSpider, PubChem, and ChEBI. Links to metabolite databases, however, seem to be missing. MetaboLights consists of two components: a repository, that enables the metabolomic community to share experimental findings, data and protocols for any metabolomic study. (Fig. 1-2)
The SIRIUS software is developed by the group of Sebastian Böcker at the Friedrich Schiller University Jena, Germany and since 2019 together with Bright Giant GmbH.SIRIUS development started in 2009 as a software for identification of the molecular formula by decomposing high-resolution isotope patterns (also called MS1 data). [1]
MetPA provides an extensive tutorial explaining how to upload data and how interpret its output. In 2011 MetPA functions were expanded and integrated into MetaboAnalyst. [4] This integration allows users to perform a more complete analysis and to link to other data processing and data interpretation functions available through MetaboAnalyst.
Skyline is an open source software for targeted proteomics [1] [2] and metabolomics [3] data analysis. It runs on Microsoft Windows and supports the raw data formats from multiple mass spectrometric vendors. It contains a graphical user interface to display chromatographic data for individual peptide or small molecule analytes.
Susanna-Assunta Sansone is a British-Italian data scientist who is professor of data readiness at the University of Oxford where she leads the data readiness group and serves as associate director of the Oxford e-Research Centre. [3] Her research investigates techniques for improving the interoperability, reproducibility and integrity of data ...
The data generated in metabolomics usually consist of measurements performed on subjects under various conditions. These measurements may be digitized spectra, or a list of metabolite features. In its simplest form, this generates a matrix with rows corresponding to subjects and columns corresponding with metabolite features (or vice versa). [ 8 ]
Human Metabolome Database; Content; Description: Metabolomics database: Data types captured: Human metabolite structures, metabolite descriptions, metabolite reactions, metabolite enzymes and transporters, human enzyme and transporter sequences, human metabolic pathways, normal and abnormal metabolite concentrations in humans, associated diseases, chemical properties, nomenclature, synonyms ...