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This list of phylogenetics software is a compilation of computational phylogenetics software used to produce phylogenetic trees. Such tools are commonly used in comparative genomics , cladistics , and bioinformatics .
Phylogenetic inference and data visualization for allelic/SNP sequences profiles using Minimum Spanning Trees: All [29] SplitsTree: Software for viewing trees, cladograms, NeighborNets, and other graphs All [30] TreeDyn Open-source software for tree manipulation and annotation allowing incorporation of meta information: All [31] Treevolution
Inference, validation and visualization of phylogenetic trees and phylogenetic networks Web browser, Windows: GNU (GPL) v3 ... List of genetic engineering software;
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List of gene prediction software; List of disorder prediction software; List of Protein subcellular localization prediction tools; List of phylogenetics software; List of phylogenetic tree visualization software; Category:Metagenomics_software; Structural biology software. List of molecular graphics systems; List of protein-ligand docking ...
VectorBee; PeptiCloud; BlueTractorSoftware DNADynamo; Agilent Technologies RFLP Decoder Software, Fish Species; Applied Biosystems GeneMapper; Joint BioEnergy Institute j5; CLC bio CLC DNA Workbench Software
PHYLogeny Inference Package (PHYLIP) is a free computational phylogenetics package of programs for inferring evolutionary trees (phylogenies). [1] It consists of 65 portable programs, i.e., the source code is written in the programming language C.
It is released as free and open-source software, under a GNU General Public License (GPL) version 2. UGENE helps biologists to analyze various biological genetics data, such as sequences, annotations, multiple alignments, phylogenetic trees, NGS assemblies, and others. The data can be stored both locally (on a personal computer) and on a shared ...