Search results
Results from the WOW.Com Content Network
MNHN-Tree-Tools is an opensource phylogenetics inference software working on nucleic and protein sequences. Clustering of DNA or protein sequences and phylogenetic tree inference from a set of sequences. At the core it employs a distance-density based approach. Thomas Haschka, Loïc Ponger, Christophe Escudé and Julien Mozziconacci [28 ...
an online tool for phylogenetic tree view (newick format) that allows multiple sequence alignments to be shown together with the trees (fasta format) EvolView [3] an online tool for visualizing, annotating and managing phylogenetic trees IcyTree [4] Client-side Javascript SVG viewer for annotated rooted trees. Also supports phylogenetic networks
T-REX (Tree and Reticulogram Reconstruction) [1] [2] is a freely available web server, developed at the department of Computer Science of the Université du Québec à Montréal, dedicated to the inference, validation and visualization of phylogenetic trees and phylogenetic networks.
PHYLogeny Inference Package (PHYLIP) is a free computational phylogenetics package of programs for inferring evolutionary trees (phylogenies). [1] It consists of 65 portable programs, i.e., the source code is written in the programming language C.
Mesquite is a software package primarily designed for phylogenetic analyses. It was developed as a successor to MacClade, [1] when the authors recognized that implementing a modular architecture in MacClade would be infeasible. [2]
This editing process can be depicted into two subcategories: "Primary Structure Editor" and "Secondary Structure Editor". This provides the necessary make up for developing a phylogenetic tree. The software provides the visualization of the biological sequences, commonly used when comparing phylogeny data from various organisms. [1]
List of phylogeny software, hosted at the University of Washington; The Genealogical World of Phylogenetic Networks provides a wide range of examples for splits graphs, most of which were generated with SplitsTree; Who is Who in Phylogenetic Networks lists software, researchers and literature dealing with phylogenetic networks
The software also implemented likelihood mapping, [2] a method to visualize phylogenetic information in datasets, as well as several tests to assess if the likelihoods of trees are significantly worse than those of other trees. The program's successor is IQ-TREE. [3]