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Sequence homology is the biological homology between DNA, RNA, or protein sequences, defined in terms of shared ancestry in the evolutionary history of life. Two segments of DNA can have shared ancestry because of three phenomena: either a speciation event (orthologs), or a duplication event (paralogs), or else a horizontal (or lateral) gene ...
As with anatomical structures, sequence homology between protein or DNA sequences is defined in terms of shared ancestry. Two segments of DNA can have shared ancestry because of either a speciation event or a duplication event . Homology among proteins or DNA is typically inferred from their sequence similarity.
Sequence comparison is considered a measure robust enough to correct erroneous assumptions in the phylogenetic tree in instances where other evidence is scarce. For example, neutral human DNA sequences are approximately 1.2% divergent (based on substitutions) from those of their nearest genetic relative, the chimpanzee , 1.6% from gorillas ...
In the genomic branch of bioinformatics, homology is used to predict the function of a gene: if the sequence of gene A, whose function is known, is homologous to the sequence of gene B, whose function is unknown, one could infer that B may share A's function. In structural bioinformatics, homology is used to determine which parts of a protein ...
Homology search tools may take an individual nucleic acid or protein sequence as input, or use statistical models generated from multiple sequence alignments of known related sequences. Statistical models such as profile-HMMs , and RNA covariance models which also incorporate structural information, [ 27 ] can be helpful when searching for more ...
Homology (biology), any characteristic of biological organisms that is derived from a common ancestor Sequence homology , biological homology between DNA, RNA, or protein sequences Homologous chromosomes , chromosomes in a biological cell that pair up (synapse) during meiosis
Cellular homology can also be used to calculate the homology of the genus g surface. The fundamental polygon of Σ g {\displaystyle \Sigma _{g}} is a 4 n {\displaystyle 4n} -gon which gives Σ g {\displaystyle \Sigma _{g}} a CW-structure with one 2-cell, 2 n {\displaystyle 2n} 1-cells, and one 0-cell.
Multiple sequence alignment (MSA) is the process or the result of sequence alignment of three or more biological sequences, generally protein, DNA, or RNA. These alignments are used to infer evolutionary relationships via phylogenetic analysis and can highlight homologous features between sequences.