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Soil microorganisms can be classified as bacteria, actinomycetes, fungi, algae and protozoa. Each of these groups has characteristics that define them and their functions in soil. [6] [7] Up to 10 billion bacterial cells inhabit each gram of soil in and around plant roots, a region known as the rhizosphere.
The plant microbiome, also known as the phytomicrobiome, plays roles in plant health and productivity and has received significant attention in recent years. [1] [2] The microbiome has been defined as "a characteristic microbial community occupying a reasonably well-defined habitat which has distinct physio-chemical properties.
The function of all root hairs is to collect water and mineral nutrients in the soil to be sent throughout the plant. In roots, most water absorption happens through the root hairs. The length of root hairs allows them to penetrate between soil particles and prevents harmful bacterial organisms from entering the plant through the xylem vessels. [1]
The root microbiome (also called rhizosphere microbiome) is the dynamic community of microorganisms associated with plant roots. [1] Because they are rich in a variety of carbon compounds, plant roots provide unique environments for a diverse assemblage of soil microorganisms, including bacteria, fungi, and archaea.
It is known that the biocrust does play a role in the absorption and retention of moisture in the soil. In arid and semi-arid environments biocrust can cover over 70% of the soil not being covered by plants, indicating that the relationship between soil, water, and biocrust is extremely pertinent to these environments. [19]
The rhizosphere is the thin area of soil immediately surrounding the root system. It is a densely populated area in which the roots compete with invading root systems of neighboring plant species for space, water, and mineral nutrients as well as form positive and negative relationships with soil-borne microorganisms such as bacteria, fungi and insects.
Without soil fauna, microbes that directly prey upon competitors of plants, and plant mutualists, interactions within the rhizosphere would be antagonistic toward the plants. Soil fauna provides the rhizosphere's top-down component while allowing for the bottom-up increase in nutrients from rhizodeposition and inorganic nitrogen.
The soil is home to a large proportion of the world's biodiversity.The links between soil organisms and soil functions are complex. The interconnectedness and complexity of this soil 'food web' means any appraisal of soil function must necessarily take into account interactions with the living communities that exist within the soil.