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Miller–Bravais indices. With hexagonal and rhombohedral lattice systems, it is possible to use the Bravais–Miller system, which uses four indices (h k i ℓ) that obey the constraint h + k + i = 0. Here h, k and ℓ are identical to the corresponding Miller indices, and i is a redundant index.
Atomistix Virtual NanoLab (VNL) is a commercial point-and-click software for simulation and analysis of physical and chemical properties of nanoscale devices. Virtual NanoLab is developed and sold commercially by QuantumWise A/S. [1] QuantumWise was then acquired by Synopsys in 2017. [2]
DX Studio - a suite of tools for simulation and visualization. Dymola - modeling and simulation software based on the Modelica language. DYNAMO - historically important language used for system dynamics modelling. Ecolego - a simulation software tool for creating dynamic models and performing deterministic and probabilistic simulations.
Comprehensive life science modeling and simulation suite of applications focused on optimizing drug discovery process: small molecule simulations, QM-MM, pharmacophore modeling, QSAR, protein-ligand docking, protein homology modeling, sequence analysis, protein-protein docking, antibody modeling, etc.
The orientation of a plane with respect to the unit cell is most conveniently expressed in terms of Miller indices. For example, the set of Miller indices (110) describes the set of parallel planes (family of lattice planes) parallel to the z-axis and cutting the x- and the y-axis once, such that every unit cell is bisected by precisely one of ...
The Miller indices for a plane are integers with no common factors. Negative indices are indicated with horizontal bars, as in (1 2 3). In an orthogonal coordinate system for a cubic cell, the Miller indices of a plane are the Cartesian components of a vector normal to the plane. Considering only (hkℓ) planes intersecting one or more lattice ...
Amira (ah-MEER-ah) is a software platform for visualization, processing, and analysis of 3D and 4D data. It is being actively developed by Thermo Fisher Scientific in collaboration with the Zuse Institute Berlin (ZIB), and commercially distributed by Thermo Fisher Scientific — together with its sister software Avizo.
Java 3D applet or standalone program: Ovito: MM XRD EM MD: Free open-source: Python [13] [14] PyMOL: MM XRD SMI EM: Open-source [15] Python [16] [self-published source?] According to the author, almost 1/4 of all published images of 3D protein structures in the scientific literature were made via PyMOL. [citation needed] RasMol: Free open ...