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The pcregrep command is an implementation of grep that uses Perl regular expression syntax. [17] Similar functionality can be invoked in the GNU version of grep with the -P flag. [18] Ports of grep (within Cygwin and GnuWin32, for example) also run under Microsoft Windows. Some versions of Windows feature the similar qgrep or findstr command. [19]
It ships with most Linux distributions, [230] AmigaOS 4 (using Python 2.7), FreeBSD (as a package), NetBSD, and OpenBSD (as a package) and can be used from the command line (terminal). Many Linux distributions use installers written in Python: Ubuntu uses the Ubiquity installer, while Red Hat Linux and Fedora Linux use the Anaconda installer.
This originates in ed, where / is the editor command for searching, and an expression /re/ can be used to specify a range of lines (matching the pattern), which can be combined with other commands on either side, most famously g/re/p as in grep ("global regex print"), which is included in most Unix-based operating systems, such as Linux ...
The Biopython project is an open-source collection of non-commercial Python tools for computational biology and bioinformatics, created by an international association of developers. [ 1 ] [ 4 ] [ 5 ] It contains classes to represent biological sequences and sequence annotations , and it is able to read and write to a variety of file formats.
In this example, /usr/bin/env is the full path of the env command. The environment is not altered. Note that it is possible to specify the interpreter without using env, by giving the full path of the python interpreter. A problem with that approach is that on different computer systems, the exact path may be different.
poppler-utils is a collection of command-line utilities built on Poppler's library API, to manage PDF and extract contents: pdfattach – add a new embedded file (attachment) to an existing PDF; pdfdetach – extract embedded documents from a PDF; pdffonts – lists the fonts used in a PDF
The command ls -l is executed as a process, the output (stdout) of which is piped to the input (stdin) of the process for grep key; and likewise for the process for less. Each process takes input from the previous process and produces output for the next process via standard streams .
FREJ (Fuzzy Regular Expressions for Java) open-source library provides command-line interface which could be used in the way similar to agrep. Unlike agrep or TRE it could be used for constructing complex substitutions for matched text. [4] However its syntax and matching abilities differs significantly from ones of ordinary regular expressions.