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This list of protein subcellular localisation prediction tools includes software, databases, and web services that are used for protein subcellular localization prediction. Some tools are included that are commonly used to infer location through predicted structural properties, such as signal peptide or transmembrane helices , and these tools ...
Screenshot of Fiji in Windows 11. Fiji [4] [5] is an open source image processing package based on ImageJ2. Fiji's main purpose is to provide a distribution of ImageJ2 with many bundled plugins. Fiji features an integrated updating system and aims to provide users with a coherent menu structure, extensive documentation in the form of detailed ...
Custom acquisition, analysis and processing plugins can be developed using ImageJ's built-in editor and a Java compiler. User-written plugins make it possible to solve many image processing and analysis problems, from three-dimensional live-cell imaging [ 6 ] to radiological image processing, [ 7 ] multiple imaging system data comparisons [ 8 ...
The Colocalization Benchmark Source (CBS) is a free collection of downloadable images to test and validate the degree of colocalization of markers in any fluorescence microscopy studies. Colocalization is a visual phenomenon when two molecules of interest are associated with the same structures in the cells and potentially share common ...
Attempts to rectify this include re-examination and revision of some of the coefficients, [7] [8] application of a factor to correct for noise, [1] "Replicate based noise corrected correlations for accurate measurements of colocalization". [9] and the proposal of further protocols, [10] which were thoroughly reviewed by Bolte and Cordelieres ...
Implementation of Otsu's thresholding method as GIMP-plugin using Script-Fu (a Scheme-based language) Lecture notes on thresholding – covers the Otsu method; A plugin for ImageJ using Otsu's method to do the threshold; A full explanation of Otsu's method with a working example and Java implementation; Implementation of Otsu's method in ITK
Proprietary commercial software: Windows: Quickfield: EM, Heat Transfer and Stress Analysis [10] Tera Analysis Ltd: 6.4 [11] 2020-04-17: Proprietary EULA: Free Student Edition available [12] Windows: Pam Crash: Best used for explicit dynamics / crash analysis ESI 15.5.1 2020-03-05 Proprietary commercial software: Linux, Windows: LS-DYNA
Software by NIST for compression of structure with mass spectra. The program seeks to find mechanisms and their rates for all fragmentation types (EI, Tandem positive and negative mode) and correlates mass spectral peaks to a probable origin structure. It contains an isotope calculator and other features and on-line help.