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Screenshot of Fiji in Windows 11. Fiji [4] [5] ... One of Fiji's principal aims is to make the installation of ImageJ, Java, Java 3D, the plugins, and further ...
ImageJ is a Java-based image processing program developed at the National Institutes of Health and the Laboratory for Optical and Computational Instrumentation (LOCI, University of Wisconsin). [ 2 ] [ 3 ] Its first version, ImageJ 1.x, is developed in the public domain , while ImageJ2 and the related projects SciJava , ImgLib2 , and SCIFIO are ...
Pre-trained workflows can be executed directly from ImageJ/Fiji using the ilastik-ImageJ plugin. [4] Pre-trained ilastik Pixel Classification workflows can be run directly in Python with the ilastik Python package, [5] which is available via conda.
Anaconda is an open source [9] [10] data science and artificial intelligence distribution platform for Python and R programming languages.Developed by Anaconda, Inc., [11] an American company [1] founded in 2012, [11] the platform is used to develop and manage data science and AI projects. [9]
CellProfiler interfaces with the high-performance scientific libraries NumPy and SciPy for many mathematical operations, the Open Microscopy Environment [11] Consortium’s Bio-Formats library for reading more than 100 image file formats, ImageJ for use of plugins and macros, and ilastik for pixel-based classification. [12]
pip (also known by Python 3's alias pip3) is a package-management system written in Python and is used to install and manage software packages. [4] The Python Software Foundation recommends using pip for installing Python applications and its dependencies during deployment. [5]
TensorFlow is available on 64-bit Linux, macOS, Windows, and mobile computing platforms including Android and iOS. [citation needed] Its flexible architecture allows for easy deployment of computation across a variety of platforms (CPUs, GPUs, TPUs), and from desktops to clusters of servers to mobile and edge devices.
There are several packages that make bioimage informatics methods available through a graphical user interface such as ImageJ, FIJI, CellProfiler, chunkflow or Icy. Visualization and analysis platforms such as Vaa3D have appeared in recent years and have been used in both large scale projects especially for neuroscience and desktop applications.