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Exon trapping or 'gene trapping' is a molecular biology technique that exploits the existence of the intron-exon splicing to find new genes. [13] The first exon of a 'trapped' gene splices into the exon that is contained in the insertional DNA .
The word intron is derived from the terms intragenic region, [1] and intracistron, [2] that is, a segment of DNA that is located between two exons of a gene.The term intron refers to both the DNA sequence within a gene and the corresponding sequence in the unprocessed RNA transcript.
The word intron is derived from the term intragenic region, i.e., a region inside a gene. [1] The term intron refers to both the DNA sequence within a gene and the corresponding RNA sequence in RNA transcripts. [2] The non-intron sequences that become joined by this RNA processing to form the mature RNA are called exons. [3]
The genomic fragment is inserted into the intron of a 'splicing vector' consisting of a known exon - intron - exon sequence of DNA, and the vector is then inserted into an eukaryotic cell. If the fragment does not contain exons (i.e., consists solely of intron DNA), it will be spliced out together with the vector's original intron.
Intron retention: A sequence may be spliced out as an intron or simply retained. This is distinguished from exon skipping because the retained sequence is not flanked by introns . If the retained intron is in the coding region, the intron must encode amino acids in frame with the neighboring exons, or a stop codon or a shift in the reading ...
The mutation must occur at the specific site at which intron splicing occurs: within non-coding sites in a gene, directly next to the location of the exon. The mutation can be an insertion, deletion, frameshift, etc. The splicing process itself is controlled by the given sequences, known as splice-donor and splice-acceptor sequences, which ...
RNA-Seq can also be used to determine exon/intron boundaries and verify or amend previously annotated 5' and 3 ... and leverage more mature DNA sequencing technology.
A minigene is a minimal gene fragment that includes an exon and the control regions necessary for the gene to express itself in the same way as a wild type gene fragment. This is a minigene in its most basic sense. More complex minigenes can be constructed containing multiple exons and intron(s).