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The atomic binding energy of the atom is the energy required to disassemble an atom into free electrons and a nucleus. [4] It is the sum of the ionization energies of all the electrons belonging to a specific atom. The atomic binding energy derives from the electromagnetic interaction of the electrons with the nucleus, mediated by photons.
The bond dissociation energy (enthalpy) [4] is also referred to as bond disruption energy, bond energy, bond strength, or binding energy (abbreviation: BDE, BE, or D). It is defined as the standard enthalpy change of the following fission: R—X → R + X. The BDE, denoted by Dº(R—X), is usually derived by the thermochemical equation,
Ligand efficiency is a measurement of the binding energy per atom of a ligand to its binding partner, such as a receptor or enzyme. [1]Ligand efficiency is used in drug discovery research programs to assist in narrowing focus to lead compounds with optimal combinations of physicochemical properties and pharmacological properties.
This free-energy map is also known as a potential of mean force (PMF). Free-energy perturbation calculations only converge properly when the difference between the two states is small enough; therefore it is usually necessary to divide a perturbation into a series of smaller "windows", which are computed independently.
The definition of the Gibbs function is = + where H is the enthalpy defined by: = +. Taking differentials of each definition to find dH and dG, then using the fundamental thermodynamic relation (always true for reversible or irreversible processes): = where S is the entropy, V is volume, (minus sign due to reversibility, in which dU = 0: work other than pressure-volume may be done and is equal ...
In thermodynamics, the Gibbs free energy (or Gibbs energy as the recommended name; symbol ) is a thermodynamic potential that can be used to calculate the maximum amount of work, other than pressure–volume work, that may be performed by a thermodynamically closed system at constant temperature and pressure.
A graphical representation of the semi-empirical binding energy formula. The binding energy per nucleon in MeV (highest numbers in yellow, in excess of 8.5 MeV per nucleon) is plotted for various nuclides as a function of Z, the atomic number (y-axis), vs. N, the number of neutrons (x-axis). The highest numbers are seen for Z = 26 (iron).
Thermodynamic databases contain information about thermodynamic properties for substances, the most important being enthalpy, entropy, and Gibbs free energy.Numerical values of these thermodynamic properties are collected as tables or are calculated from thermodynamic datafiles.