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In a database, a query that is not indexed results in a full table scan, where the database processes each record of the table to find all records meeting the given requirements. Even if the query selects just a few rows from the table, all rows in the entire table will be examined.
To process this statement without an index the database software must look at the last_name column on every row in the table (this is known as a full table scan). With an index the database simply follows the index data structure (typically a B-tree) until the Smith entry has been found; this is much less computationally expensive than a full ...
Scan the database sequences for exact matches with the remaining high-scoring words. The BLAST program scans the database sequences for the remaining high-scoring word, such as PEG, of each position. If an exact match is found, this match is used to seed a possible un-gapped alignment between the query and database sequences.
BLAT can handle long database sequences, however, it is more effective with short query sequences than long query sequences. Kent [ 1 ] recommends a maximum query length of 200,000 bases. The UCSC browser limits query sequences to less than 25,000 letters (i.e. nucleotides ) for DNA searches and less than 10,000 letters (i.e. amino acids ) for ...
Trino is an open-source distributed SQL query engine designed to query large data sets distributed over one or more heterogeneous data sources. [1] Trino can query data lakes that contain a variety of file formats such as simple row-oriented CSV and JSON data files to more performant open column-oriented data file formats like ORC or Parquet [2] [3] residing on different storage systems like ...
BASys (Bacterial Annotation System) is a freely available web server that can be used to perform automated, comprehensive annotation of bacterial genomes. [2] With the advent of next generation DNA sequencing it is now possible to sequence the complete genome of a bacterium (typically ~4 million bases) within a single day.
The Browser is a graphical viewer optimized to support fast interactive performance and is an open-source, web-based tool suite built on top of a MySQL database for rapid visualization, examination, and querying of the data at many levels. The Genome Browser Database, browsing tools, downloadable data files, and documentation can all be found ...
Every relation in the query can be accessed via a sequential scan. If there is an index on a relation that can be used to answer a predicate in the query, an index scan can also be used. For each relation, the optimizer records the cheapest way to scan the relation, as well as the cheapest way to scan the relation that produces records in a ...