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2. List of alignment visualization software - Wikipedia

   en.wikipedia.org/wiki/List_of_alignment...

   Manual annotation, conservation scores Nexus, MSF, Clustal, FASTA, PFAAT Proprietary, freeware? ? Official website: Ralee (emacs plugin for RNA al. editing) ? RNA structure ? ? Stockholm: Free, GPL? ? Official website: S2S RNA editor 2D structure Rnalign No Base-base interactions, 2D-3D viewer FASTA, RnaML Proprietary, freeware? ? Official ...

3. List of PDF software - Wikipedia

   en.wikipedia.org/wiki/List_of_PDF_software

   Proprietary software for viewing and editing PDF documents. pdftk: GNU GPL/Proprietary: command-line tools to manipulate, edit and convert documents; supports filling of PDF forms with FDF/XFDF data. PDF-XChange Viewer: Freeware: Freeware PDF reader, tagger, editor (simple editions) and converter (free for non-commercial uses).

4. FASTA format - Wikipedia

   en.wikipedia.org/wiki/FASTA_format

   The original FASTA/Pearson format is described in the documentation for the FASTA suite of programs. It can be downloaded with any free distribution of FASTA (see fasta20.doc, fastaVN.doc, or fastaVN.me—where VN is the Version Number).

5. List of sequence alignment software - Wikipedia

   en.wikipedia.org/wiki/List_of_sequence_alignment...

   FASTA: Local search with fast k-tuple heuristic, slower but more sensitive than BLAST: Both: GGSEARCH, GLSEARCH Global:Global (GG), Global:Local (GL) alignment with statistics: Protein: Genome Magician Software for ultra fast local DNA sequence motif search and pairwise alignment for NGS data (FASTA, FASTQ). DNA: Hepperle D (www.sequentix.de ...

6. FASTA - Wikipedia

   en.wikipedia.org/wiki/FASTA

   FASTA is a DNA and protein sequence alignment software package first described by David J. Lipman and William R. Pearson in 1985. [1] Its legacy is the FASTA format which is now ubiquitous in bioinformatics .

7. Fast statistical alignment - Wikipedia

   en.wikipedia.org/wiki/Fast_statistical_alignment

   Fast statistical alignment or FSA is a multiple sequence alignment program for aligning many proteins, RNAs, or long genomic DNA sequences.Along with MUSCLE and MAFFT, FSA is one of the few sequence alignment programs which can align datasets of hundreds or thousands of sequences.