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Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.
[1] [5] [6] The GeneCards database provides access to free Web resources about more than 350,000 known and predicted human genes, integrated from >150 data resources, such as HGNC, Ensembl, and NCBI. The core gene list is based on NCBI, Ensembl and approved gene symbols published by the HUGO Gene Nomenclature Committee (HGNC).
Ensembl makes these data freely accessible to the world research community. All the data and code produced by the Ensembl project is available to download, [7] and there is also a publicly accessible database server allowing remote access. In addition, the Ensembl website provides computer-generated visual displays of much of the data.
Users can select various types of identifiers such as CCDS ID, gene ID, gene symbol, nucleotide ID and protein ID to search for specific CCDS information. [1] The CCDS reports (Figure 1) are presented in a table format, providing links to specific resources, such as a history report, Entrez Gene [ 10 ] or re-query the CCDS data set.
In 2010, BGI bought 128 Illumina HiSeq 2000 gene-sequencing machines, [3] [17] which was backed by US$1.5 billion in "collaborative funds" over the next 10 years from the state lender China Development Bank. [5] [23] [24] By the end of the year, they reportedly had a budget of $30 million. [25]
25793 69754 Ensembl ENSG00000100225 ENSMUSG00000001786 UniProt Q9Y3I1 Q3U7U3 RefSeq (mRNA) NM_001033024 NM_001257990 NM_012179 NM_153195 NM_001310745 NM_001347151 RefSeq (protein) NP_001028196 NP_001244919 NP_036311 NP_001297674 NP_001334080 NP_694875 Location (UCSC) Chr 22: 32.47 – 32.5 Mb Chr 10: 85.86 – 85.89 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse F-box only protein 7 ...
Ensembl: UniProt: RefSeq (mRNA) NM_001009923 NM_001009924 NM_001009925 ... TMEM230 or transmembrane protein 230 is a protein that in humans is encoded by the TMEM230 ...
4893 18176 Ensembl ENSG00000213281 ENSMUSG00000027852 UniProt P01111 P08556 RefSeq (mRNA) NM_002524 NM_010937 NM_001368638 RefSeq (protein) NP_002515 n/a Location (UCSC) Chr 1: 114.7 – 114.72 Mb Chr 3: 102.97 – 102.98 Mb PubMed search Wikidata View/Edit Human View/Edit Mouse NRAS is an enzyme that in humans is encoded by the NRAS gene. It was discovered by a small team of researchers led ...