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  2. Ensembl Genomes - Wikipedia

    en.wikipedia.org/wiki/Ensembl_Genomes

    Most Ensembl Genomes data is stored in MySQL relational databases and can be accessed by the Ensembl REST interface, the Perl API, Biomart or online. [5] Ensembl Genomes is an open project, and most of the code, tools, and data are available to the public. [6] Ensembl and Ensembl Genomes software uses an Apache 2.0 license [7] license.

  3. GeneCards - Wikipedia

    en.wikipedia.org/wiki/GeneCards

    [1] [5] [6] The GeneCards database provides access to free Web resources about more than 350,000 known and predicted human genes, integrated from >150 data resources, such as HGNC, Ensembl, and NCBI. The core gene list is based on NCBI, Ensembl and approved gene symbols published by the HUGO Gene Nomenclature Committee (HGNC).

  4. List of biological databases - Wikipedia

    en.wikipedia.org/wiki/List_of_biological_databases

    Cervical cancer gene database; Ensembl: provides automatic annotation databases for human, mouse, other vertebrate and eukaryote genomes; Ensembl Genomes: provides genome-scale data for bacteria, protists, fungi, plants and invertebrate metazoa, through a unified set of interactive and programmatic interfaces (using the Ensembl software platform)

  5. Ensembl genome database project - Wikipedia

    en.wikipedia.org/wiki/Ensembl_genome_database...

    Ensembl makes these data freely accessible to the world research community. All the data and code produced by the Ensembl project is available to download, [7] and there is also a publicly accessible database server allowing remote access. In addition, the Ensembl website provides computer-generated visual displays of much of the data.

  6. Consensus CDS Project - Wikipedia

    en.wikipedia.org/wiki/Consensus_CDS_Project

    Users can select various types of identifiers such as CCDS ID, gene ID, gene symbol, nucleotide ID and protein ID to search for specific CCDS information. [1] The CCDS reports (Figure 1) are presented in a table format, providing links to specific resources, such as a history report, Entrez Gene [ 10 ] or re-query the CCDS data set.

  7. GENCODE - Wikipedia

    en.wikipedia.org/wiki/GENCODE

    Also, the GENCODE website contains a Genome Browser for human and mouse where you can reach any genomic region by giving the chromosome number and start-end position (e.g. 22:30,700,000..30,900,000), as well as by ENS transcript id (with/without version), ENS gene id (with/without version) and gene name. The browser is powered by Biodalliance. [19]

  8. Genome browser - Wikipedia

    en.wikipedia.org/wiki/Genome_browser

    Ensembl [8] offers advanced comparative genomics tools, including the ability to compare gene structures, genome alignments, and synteny between different organisms. Customization and Annotation: Can allow users to customize the display of genomic data by adding their own annotations, tracks, or visualizations.

  9. Rat Genome Database - Wikipedia

    en.wikipedia.org/wiki/Rat_genome_database

    Genes: Initial gene records are imported and updated from the National Center for Biotechnology Information's Gene database on a weekly basis. Data imported during this process includes the Gene ID, Genbank /RefSeq nucleotide and protein sequence identifiers, HomoloGene group IDs and Ensembl Gene, Transcript and Protein IDs.

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