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The longest common substrings of a set of strings can be found by building a generalized suffix tree for the strings, and then finding the deepest internal nodes which have leaf nodes from all the strings in the subtree below it. The figure on the right is the suffix tree for the strings "ABAB", "BABA" and "ABBA", padded with unique string ...
The string spelled by the edges from the root to such a node is a longest repeated substring. The problem of finding the longest substring with at least k {\displaystyle k} occurrences can be solved by first preprocessing the tree to count the number of leaf descendants for each internal node, and then finding the deepest node with at least k ...
The similarity of two strings and is determined by this formula: twice the number of matching characters divided by the total number of characters of both strings. The matching characters are defined as some longest common substring [3] plus recursively the number of matching characters in the non-matching regions on both sides of the longest common substring: [2] [4]
After computing E(i, j) for all i and j, we can easily find a solution to the original problem: it is the substring for which E(m, j) is minimal (m being the length of the pattern P.) Computing E(m, j) is very similar to computing the edit distance between two strings.
This article mainly discusses algorithms for the simpler kinds of string searching. A similar problem introduced in the field of bioinformatics and genomics is the maximal exact matching (MEM). [1] Given two strings, MEMs are common substrings that cannot be extended left or right without causing a mismatch. [2]
In information theory, the Hamming distance between two strings or vectors of equal length is the number of positions at which the corresponding symbols are different. In other words, it measures the minimum number of substitutions required to change one string into the other, or equivalently, the minimum number of errors that could have transformed one string into the other.
Longest common substring problem: find the longest string (or strings) that is a substring (or are substrings) of two or more strings; Substring search. Aho–Corasick string matching algorithm: trie based algorithm for finding all substring matches to any of a finite set of strings
In computer science, the Boyer–Moore–Horspool algorithm or Horspool's algorithm is an algorithm for finding substrings in strings. It was published by Nigel Horspool in 1980 as SBM. [1] It is a simplification of the Boyer–Moore string-search algorithm which is related to the Knuth–Morris–Pratt algorithm.