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ImageJ is a Java -based image processing program developed at the National Institutes of Health and the Laboratory for Optical and Computational Instrumentation (LOCI, University of Wisconsin). [2][3] Its first version, ImageJ 1.x, is developed in the public domain, while ImageJ2 and the related projects SciJava, ImgLib2, and SCIFIO are ...
Fiji is fully open source. Its sources live in a public Git repository. Fiji was accepted as an organization into the Google Summer of Code 2009, and completed two projects. The scripting framework, which supports JavaScript, Jython, JRuby, Clojure, BeanShell, and other languages, is an integral part of the development of Fiji; many developers ...
CellProfiler can read and analyze most common microscopy image formats. [5] Biologists typically use CellProfiler to identify objects of interest (e.g. cells, colonies, C. elegans worms) and then measure their properties of interest. [6] Specialized modules for illumination correction may be applied as pre-processing step to remove distortions ...
Website. www.ilastik.org. ilastik[1] is a user-friendly free open source software for image classification and segmentation. No previous experience in image processing is required to run the software. Since 2018 ilastik is further developed and maintained by Anna Kreshuk 's group at European Molecular Biology Laboratory.
Bio7. The Open Source application Bio7 is a software for ecological simulation models, image analysis and statistical analysis. Built upon the RCP framework of Eclipse it embeds several tools and programming languages for the analysis of complex ecological systems. Several Java based scripting languages ( Groovy, BeanShell, Python/Jython ...
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IMOD is an open-source, cross-platform suite of modeling, display and image processing programs used for 3D reconstruction and modeling of microscopy images with a special emphasis on electron microscopy data. IMOD has been used across a range of scales from macromolecule structures [1] to organelles [2][3][4] to whole cells [5] and can also be ...
Endrov[1] is an open-source plugin architecture aimed for image analysis and data processing. [2] Being based on Java, it is portable and can both be run locally and as an applet. It grew out of the need for an advanced open source software that can cope with complex spatio-temporal image data, mainly obtained from microscopes in biological ...